| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3088 |
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| Symbol | |
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| ID | 4030412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3412454 |
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| End bp | 3414178 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637971503 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_578285 |
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| Protein GI | 92118556 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.710875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCTGT GTTTCGCGGG GTTTCAACTG GATCGGCCGC GCGCCGAGTT GCGTGGGCCC
GGTGGCGAAG CCCTTAAGCT CCGACCGAAA ACGCTTTGCT TGTTGATTCT GTTTGCTACC
AACCCCGGGC GGGTTTTGAG CAAGCGGGAA TTGATGGATG CGGTCTGGCC TAACGTCCAC
GTCGGCGACG ACAGCCTGTT TCAATGCATC CGGGAGATCC GAACTGCCCT TGGCGACGAG
CGTCGCCAAT TGGTCAGGCT CGTTTCCGGC CACGGCTATG TCTTCGAGGC CGAGGTTTCG
GTCCAGGCGG CGAGCAGCGA CACGCCCGTC CCTTCACCCG TTCCGCCGTT CTCCGTTACT
GACGCGCCAG GCGAACCTGA CACGCCGGGC AAACCGGACG TCACCATCGA ACCGACACGC
TTGTCGCGGC TGTCCGGCCT GCGCCGCCCC GCCGCCATGA TCGCGGCCCT GAGCGTCGTT
GTCGGGCTCG CCGTTGCCAC GGCGATCCAG CGGGCTCCTA TCTTTGAAGA GCGCGGACCG
CCGACCATTG CGGTGATGCC GATCAAAGCC GCCGGGGGCG AAGCCGCCGC AATGGCGGCA
AACGTGACGG TGCGACTTGC CGATGGATTG GCCAAGATCG AAAATATCCG CGTGGTGGCA
TTACAGAGTG CGTTACCGGC CGCCGGCACG CCGCAGGCGG ATTTCGTCCT CAGCGGAGAA
TTGCAGCAAG GCGAAGGGAC ATGGGACGCG CAGGTGCGCA TGACCCGAAC GGCGGACCGC
GAGGTCGTTT GGACTGCACC GGCGACGATT ACCGTCGGCG ACGCCGAATT GTCGCTGCAA
CAATCCCGAC TTGCTGCAAG CATCGGTCAC CCGCTTGCGG TCCGCATCAG CACGCTGCTC
GATGCGGCGG CGAAACCGAC TGAAAGCGGA CGCGGTGCGT CGCCTGGCAG CGCAAATGTC
GTGATTGAGC AGGCGACGGC GTCCATTTTG CGAACCACGC GAGACCGCTT TGCGACGGCA
CAGACGATGC TGGAAAAAGC ACTCGCCGGC GATCCTGAGA ATGTTGACCT CGCCGTGTCG
CTCGCAGCCC TTCAGTTGCG CGGCATTCAG ATGGTCTGGT ACAGCCCGGC AGACAGCGCC
GCGGCCGAGA CCAGAGCCAG GGCGATCCTG GAGCGCGCGT TGCAGGTCAA GCCGAGTTCT
ATTCCCGTGC TTGAGGCCTA TTGCCGCTTC CTCAACGCGA CCAACGAATT TGTCGAAAGC
CTGGTCGCCT GCGCCAGGAC ACTGAATTTC GATCCGTGGA ACGGGCTGGC GCTGTACCAC
ATCGGTCTTG CACAGCTTCA ATTGGGACGC TTCGAGGACG CGCTCGCGAC CTTCAAGCAG
GCGGATCGCT TCGACACACC CCAGGTCTCG CGCTGGACCT GGCTGCTTGG CGCGGGGATG
ACCTATTTGT TCATGGGCCG CAGCGAAGAA GCGCTGCCCT GGCTGCTCAG GTCGATCGCC
ATCACGCCGG CATCGGGACG GCCCTATATG CTGCTGGCCG CCGCCTACCA GCAACTGGGA
CGACCGGACG ACGCAAAAGC GGCAATGGAC AAAGCCCTCG CGCTGCGACC CGGTTCGAAT
ACAAGCAATG TCAAGCTTCC GCCAAAGAAT GCCAGTGCAG CTTTTCTTGC AGCAGGCGCA
TCTCTCGAAC GGGTCTTCGT CGCAGCCGGG TTGCCGGAGC GATGA
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| Protein sequence | MVLCFAGFQL DRPRAELRGP GGEALKLRPK TLCLLILFAT NPGRVLSKRE LMDAVWPNVH
VGDDSLFQCI REIRTALGDE RRQLVRLVSG HGYVFEAEVS VQAASSDTPV PSPVPPFSVT
DAPGEPDTPG KPDVTIEPTR LSRLSGLRRP AAMIAALSVV VGLAVATAIQ RAPIFEERGP
PTIAVMPIKA AGGEAAAMAA NVTVRLADGL AKIENIRVVA LQSALPAAGT PQADFVLSGE
LQQGEGTWDA QVRMTRTADR EVVWTAPATI TVGDAELSLQ QSRLAASIGH PLAVRISTLL
DAAAKPTESG RGASPGSANV VIEQATASIL RTTRDRFATA QTMLEKALAG DPENVDLAVS
LAALQLRGIQ MVWYSPADSA AAETRARAIL ERALQVKPSS IPVLEAYCRF LNATNEFVES
LVACARTLNF DPWNGLALYH IGLAQLQLGR FEDALATFKQ ADRFDTPQVS RWTWLLGAGM
TYLFMGRSEE ALPWLLRSIA ITPASGRPYM LLAAAYQQLG RPDDAKAAMD KALALRPGSN
TSNVKLPPKN ASAAFLAAGA SLERVFVAAG LPER
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