| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3047 |
|---|
| Symbol | |
|---|
| ID | 4032059 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 3358701 |
|---|
| End bp | 3360134 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637971471 |
|---|
| Product | Type I secretion membrane fusion protein, HlyD |
|---|
| Protein accession | YP_578253 |
|---|
| Protein GI | 92118524 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.666099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGCA GCAATCAGCG CGCGCCGGAT TCCAGAACGG GGAAAGCGCC AACTCCGGGG
TTCTTCGCGC GACGCCGACA GTCACGGCTG AGGGCGCATG CCCCCCTCAA GCCATCGATT
ATCGCCGAGT TTCAATCGGA CGCCGTCGAA ATCGAGGAGC GTGCGCCCCC TCGCGTGGCC
CGCATCACGC TCTATAGCGT CGTCGCGCTA ATCCTCGCGA TGGTGGCCTG GGCATCGTTG
TCCAGTGTAG AGACGATCGT CACAGCGCGC GGGAAATTGA TTGCAATCAG TCCGAATGTC
GCGGTCCAGC CGTTAGAAAC CTCGGTCATT CGTGAGATCA AGGTCAAAGT GGGCGACATC
GTGAGCAAGG GACAGCCGCT CGCGACGCTC GATCCAACCT TTTCGCAAGC CGATACCGAT
CAACTCCGAA CCCGCGTGAC CGCGCTGGAT GCGGCGATCA AGCGCCTGCA ATCCGAGTTG
AGTGGCGGCG ACTATGTTGC CGCGGATTCA TCGAATTCGG ATGAGTTGCT ACAGGAGAAG
CTGTTTCGTC AGCGCAGGGC GTTCTATGAA ACGTCGCTGC GTAACTATGA TGCACAGATT
GCGAGCGCGC AGGCCAACCT GAAGGCGGGC GAAGACGAAG AAGGGCTGGT GCGTCAAAGA
TTGGAAACCC TGCAGTCGAT CGAGACCATG CGCAGCTCCC TGATGGAGAA GAAGGTCGGC
TCGCGGCTGA ATTTACTGCT GTCGAAGGAT GCGCGGCTTG AAGTGGAAAA CAATCTGGCG
CGTGTCGTCG GAAGCGAGGC GGATTACAAG CACCGTGTCG AGAAAGCGAG AGCCGACCGG
CAGGTCTTCG CGGATGACTT CCGTCGCACA GCCTATCAGG AACTCGTGGA CACCCGGGCC
AAACAGAACA GCGCCGCGGA AGAGCTCAAG AAGGCCGAGC GCCGGCGGCA ATTGACGGTC
ATGGCTGCGC CAGTCGATGC CGTCGTTCTC GAGATTGCCA ACCGTACGGT GGGCTCAGTC
GTGCGCGAGG CGGAGACGCT CTTTGTGCTG GTGCCGCGCG ACACGCCTTT GCAGGCGGAA
GTGAACGTCG AGGGTCGGGA TATCGGGCAG ATTTCGATAG GGCAGCCCGT CCGGATCAAG
TTCGATGCCT TTCCGTTCCA GAAGTACGGA ACGGGATCTG GGAAGGTCAG CGTCGTCAGC
AAGGATTCAT TCGGGGCCGA AGCCAAGAGC GATGGGTCCC ATCGCGCGAT CCCCGCATAT
TACCGCGTGC TGGTGGATCT CGACAGAGCA CGGCTGCGCG GTCAGCCCGC ACAATTCCAG
ATGATCCCGG GAATGGAGCT GACGGCGGAG ATGAAGGTGG GAGATCGTCG GGTGATCTCC
TATTTCCTGT ATCCCCTCAT TCGTGGATTG GACGAGAGCA TACGTGAGCC GTGA
|
|---|
| Protein sequence | MTSSNQRAPD SRTGKAPTPG FFARRRQSRL RAHAPLKPSI IAEFQSDAVE IEERAPPRVA
RITLYSVVAL ILAMVAWASL SSVETIVTAR GKLIAISPNV AVQPLETSVI REIKVKVGDI
VSKGQPLATL DPTFSQADTD QLRTRVTALD AAIKRLQSEL SGGDYVAADS SNSDELLQEK
LFRQRRAFYE TSLRNYDAQI ASAQANLKAG EDEEGLVRQR LETLQSIETM RSSLMEKKVG
SRLNLLLSKD ARLEVENNLA RVVGSEADYK HRVEKARADR QVFADDFRRT AYQELVDTRA
KQNSAAEELK KAERRRQLTV MAAPVDAVVL EIANRTVGSV VREAETLFVL VPRDTPLQAE
VNVEGRDIGQ ISIGQPVRIK FDAFPFQKYG TGSGKVSVVS KDSFGAEAKS DGSHRAIPAY
YRVLVDLDRA RLRGQPAQFQ MIPGMELTAE MKVGDRRVIS YFLYPLIRGL DESIREP
|
|---|
| |