| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1888 |
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| Symbol | |
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| ID | 4029592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2099460 |
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| End bp | 2100659 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637970356 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_577158 |
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| Protein GI | 92117429 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.440468 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCTC GAAAGTCGAT TTGGATACTG GGTCTCGCCG CCGTCGTCGC GGCGGGCGCG
TTCGCGGCTT GGGGACCGGG AGCGCCGGCG CTGCGCAAGA CGACGGGTCT GGTCGCGGCG
GACAGGCCGC AGGGGGAGAA ACGGAACCCC GTCATTCGGA TGGGCGAAGA GCGGATCGCT
TTGGCCAGGA TCGAGCAGGT CAAAGTCGGC CCGGCGACGA TGGCGACGAG ACTGTTGGTC
CCGGCCGTCA TTGCGCCCGA TGCCGATCAG GTTGCCCACG TGTCGGTAAA GCTGTCAGGA
ACCGTCGCCG AGCTCCGCAG GAACATCGGC GACGAGGTCG AGAAGGGCGA GATCCTCGGA
GCGCTGGAGA GCCGGGAGGT CGCCGACGCG AAGAGCGAGT ACATGGCCGC GCGACTGTCG
AACGATCTGC AGCAAGATCT GGCGGCCCGC GACAAGGCGG CTTGGGGCAG CAAGGCGATA
CCCGAGCAAC AGTACATCAG GTCGCGGAAC GCCGCATCGC AGACGGCTAT GCGTCTCGAC
ATTGCTCGGC AAAAGTTGCT CGCGCTCGGG GTCGACGAAA GCGAGATTGC CGCGATCCCA
CAAGCGCCAG AGGGAACGCT CAGGCTTCAG AACGTCCGTG CGCCGATCTC CGGACGGGTA
GCGGAACGCA AGGTTGACCT CGGGACCGCT GTCGGGAGGG ACAACCTCGA GACGGAGCTC
TTCGTCATCG TTGACCTCCG TAGGGTCTGG GTCGAGATGG CGGTCAATTC GTCTGACCTG
CCGGTGGTCC GCGAAGGGCA AAGCGTCGCG GTGTCCGTCC GGGGCGGCCC CGTAGGAACG
GGCAAGATCA TCTTCGTCAG CCCCTTGCTC GACAAGGACA CGCGGGCGGC GCGCGTCGTG
GCCACCCTGG ATAACCCGGA TCGACTCTGG CGTCCCGGAT CGTTCGTGAC GGCAGCCATC
GCCGTGGACT CGCGCCCGGT CTCTGTGGCG GTGCCGGCGG TCGCCGTGCA GAGCGTGAAT
GGGCGCAAGG TCGTCTTCGT GCGAACTGCC GAGGGATTCG AGAAACGGGA CGTGGTGCTC
GGTCTTCGCG ACGATGGGAT GGTTGAAGTG ACGTCCGGAC TTGCAGCTGG CGAAACGATC
GCGTCTTCGA ACACCTTTCC ACTGAAAGCC GAACTCTCCA AGCCGGGCGT CGAGGACTGA
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| Protein sequence | MSSRKSIWIL GLAAVVAAGA FAAWGPGAPA LRKTTGLVAA DRPQGEKRNP VIRMGEERIA
LARIEQVKVG PATMATRLLV PAVIAPDADQ VAHVSVKLSG TVAELRRNIG DEVEKGEILG
ALESREVADA KSEYMAARLS NDLQQDLAAR DKAAWGSKAI PEQQYIRSRN AASQTAMRLD
IARQKLLALG VDESEIAAIP QAPEGTLRLQ NVRAPISGRV AERKVDLGTA VGRDNLETEL
FVIVDLRRVW VEMAVNSSDL PVVREGQSVA VSVRGGPVGT GKIIFVSPLL DKDTRAARVV
ATLDNPDRLW RPGSFVTAAI AVDSRPVSVA VPAVAVQSVN GRKVVFVRTA EGFEKRDVVL
GLRDDGMVEV TSGLAAGETI ASSNTFPLKA ELSKPGVED
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