Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_1449 |
Symbol | |
ID | 4032850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 1637015 |
End bp | 1639342 |
Gene Length | 2328 bp |
Protein Length | 775 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637969923 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_576731 |
Protein GI | 92117002 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00109411 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGCGCG CTCAGGCGGC GAGCCCGTGC GCTCAATCCG ATTCGATCAA GGGATTGGCG CAATCGATCG CAAAACCTGC CTACCGCAGG CTGCTGATCG CCGAGCCTGT GCTTCGCCGC GCCGTCCCTG CCCTGATCAT CGCTTTCCTG TTAACGATTT GTGTCGGCGC CCTGGTGCAG GTCATCGACC AGACCCGGCA AAAACAGGCA ATGACGAAAC ACGATCTGCT GGCGCTCGCC GATCTGCTTG CCGAGCGGCT TGAGCATGTT GGCGTCATCC ATCAGGATCG CCCCGCCTCC ATCGAACGTC TCCAGAACCT GTTGCCAAGC CTCATTCCAT CCTGGGGTAT CGCCGCCGGC CGCCATGTCA TCGTCACCGG CGCCGATCAG CGCGTTCTCG CGCGGGTGCC GATCGAGGCG GCGCCCGGCG AGAGCAGCCG GATTCTGGAG CTCATCAGCA CCGCGCAATC GCCGGCCCTG CGTGGCATGT CGTCCGCCAG CGTCGCCGAC ATCATCCTGC TCGACGGCAG CGGCGCGCTC GCGACCCAGC GTGTGGTCAG ATCATTGCTG GGCCATGTCA CCGTTATCCA GGAAAAGACC GATTCAGTGT GGCGCCCGGA CACTGCGCTG TCGATCACGC TGTCGGCCAC CACCGGATTC GTGGTCCTGA TCCTGGGCTT TGCATTTCAC TGGCAATCCA CCCGCGCGCG CGAGGGCGAT GTCATCAATG ACGCGGTCCG CGGTCGCATC GATACCGCGC TCAACCGCGG TCGATGCGGT CTTTGGGACT GGGATCTGTC GCGCGGGCGG ATATTCTGGT CGCAATCGAT GTTCACCATG CTCGGGCTGG AAAGCCGCAG CGACCTGCTC ACCTTCGGGG AGATCAGCGC GCTGGCCAAT CCCGACGACA TCGACCTGTT CGCAATCGGG GATCAGCTCA TCTCTGGGAA AATCCATCAT ATCGACCAGA GTTTCCGGAT GCGGCACAGC GGCGGTCACT GGATCTGGTT GCGCGTCCGT TGCGAACTCA GTCAGGGTGC GGGCGACGGT GCCGCTCATC TGATCGGGAT TGCCGTCGAC ATCACCGAAC AAAAGAGCCT CGCCGAGAAA ACCGTCGAAG CCGATCTTCG GCTGCGGGAC GCGATCGAAA CCATCCCCGA GGCCTTTGTG CTGTGGGATG CCGACGACCG TCTGGTCCTT TGCAACTCTC ACTTCCAGCG CCTGCACAAG CTGCCCGAGA GCGCGGTCGC GGCCGGCACC TCCTACGAGA CCGTGATCGA GGTCGGCCGC ATGCACGAAA TTTGCGCACG GCCACCCGAA ACCGGCACAA CCGCTCCGGG CGCGCGGACC TTCGAAGCGC AGCTCGATAA CGGCTGCTGG CTTAACATCA GCGAACGCCG CACCAAGGAC GGCGGTTATG TGTCGGTCGG AACCGACATC ACCCGGATCA AGGAGCACGA ACAAAAGCTC GTCGACAACG ACCTCCGGCT GCGGGCGACC GTCATCGATC TGAAACGGAC GCAGGCGACG CTCGAACAAC AGGCGATCGA GCTTGCGGAC CTTGCGCAGA AATACGCGAA GGAGAAAGAT CGCGCCGAGG ACGCCAATCG AGCGAAATCA AAATTCCTCG CCAACATGAG TCACGAACTG CGAACGCCGC TCAATGCCAT CATCGGATTC TCCGAGATCA TGAGCAACGG CATGTTCGGC ACCCTCGGCT CGGAGAAGTA CAGCGAATAT TGCCACGACA TCCTGACCAG CGGCCAATAT CTGCTCGAGG TCATCAACGA CGTCCTGGAT ATGTCCAAGA TCGAAGCCGG CCGCATGAAA CTCGACATGG AGCCGCTCGA TCTCTCCAGG ACGCTGGCGG AATCGCTGCG GGTCGTCACA GGCCGCACCA GCGACAAGAA GCTGACTTTC GACGTCCGGA TCGACGATGA CATTGCCATC ACTGCCGACC ATCGCGCGGT CAAGCAGATC ATCGTCAATC TGCTGTCCAA TGCCGTGAAG TTCACGCCCG ATGGCGGACG AGTCATGGCG CGAAGCCAGG TGTTTGCGAA TTCCGTTGCC CTGACGATTG CCGACACCGG CATCGGCATC GCGCCGCATT CGCTGCGAAA ACTGGGCAAA CCGTTCGAAC AGGTCGAAAG CCAGTTGACC AAAACCTATG CGGGATCGGG GCTCGGGCTG GCGATCGCCA AATCGCTGGT CAACCTGCAC GGCGGGTCGA TGCGGCTTCG CTCGAAGCCC GGAACGGGAA CCGTCGTCCG CGTCACCCTG CCCCGTCACG GCCGCCTGGA CAATCCCGCC GCCAGCGCCG CCGCTTAG
|
Protein sequence | MARAQAASPC AQSDSIKGLA QSIAKPAYRR LLIAEPVLRR AVPALIIAFL LTICVGALVQ VIDQTRQKQA MTKHDLLALA DLLAERLEHV GVIHQDRPAS IERLQNLLPS LIPSWGIAAG RHVIVTGADQ RVLARVPIEA APGESSRILE LISTAQSPAL RGMSSASVAD IILLDGSGAL ATQRVVRSLL GHVTVIQEKT DSVWRPDTAL SITLSATTGF VVLILGFAFH WQSTRAREGD VINDAVRGRI DTALNRGRCG LWDWDLSRGR IFWSQSMFTM LGLESRSDLL TFGEISALAN PDDIDLFAIG DQLISGKIHH IDQSFRMRHS GGHWIWLRVR CELSQGAGDG AAHLIGIAVD ITEQKSLAEK TVEADLRLRD AIETIPEAFV LWDADDRLVL CNSHFQRLHK LPESAVAAGT SYETVIEVGR MHEICARPPE TGTTAPGART FEAQLDNGCW LNISERRTKD GGYVSVGTDI TRIKEHEQKL VDNDLRLRAT VIDLKRTQAT LEQQAIELAD LAQKYAKEKD RAEDANRAKS KFLANMSHEL RTPLNAIIGF SEIMSNGMFG TLGSEKYSEY CHDILTSGQY LLEVINDVLD MSKIEAGRMK LDMEPLDLSR TLAESLRVVT GRTSDKKLTF DVRIDDDIAI TADHRAVKQI IVNLLSNAVK FTPDGGRVMA RSQVFANSVA LTIADTGIGI APHSLRKLGK PFEQVESQLT KTYAGSGLGL AIAKSLVNLH GGSMRLRSKP GTGTVVRVTL PRHGRLDNPA ASAAA
|
| |