| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1341 |
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| Symbol | |
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| ID | 4032104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 1518869 |
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| End bp | 1521991 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637969817 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_576625 |
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| Protein GI | 92116896 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.108803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACAGAG TTCGAACAAG CCCGGAGGGC AAGGCAACGA CTGACTCAGA GCGCAATTAC
CGGTCGCCCA TAAGCCAATT GCACGCGCCA AAATTCAGGT CCGGCTTCTC ACTCTCTTAT
TCAGTCATCG CTCTCGGCGC GACGCTGGTC TTCTCTGGCG AGGCCTATGG GCAATGCTCC
CCACTCCCAC CGGGGTCTGT CAATTTGACC ACCGGGGCCT GCACGGACGA TGGCGTCAGT
CGAACGAGCA GCACGGTCAA TACGCCAGCG ATCGGTGTGT CAGGGGACGG ATCATACACT
GGCAATGGCG TCATCATCGC GACCACTGCT GGCAGCGCTT TCGGGGCCGA GGTCTCGGGA
CTAGGGCACA TCGTCCTCTC GGGCGGTACG CTAACGACGA GCGGGACTGA CTCCACAGGT
ATTCTGGTCG AAAGCGGCGG AACGCTCACC ACGCAAGACG GCCTGACCAT CGAGACATTC
GCCAAGGGCG CAACGGGCGT CTCCGTCCTG GGCGCGGGCG CGTCAGCCAA TTTGAGCAAC
ACCAGCGTGT CGGTCCATGG AGACACTTCC TTCGGCTTGA AGGCCAACGG CGGGGCCATC
GTCGGCAACG ACCTGACGAT CAAGACCGCG GGCACCGACG GGCAGGCCCA CGGCGTTCTG
ACGGAAACGA ACGGCACGAT CGATCTCACG CGGGCGACAA TCACCACGAC AGGAGCCTCG
TCCGAGGGAT TGTACGCCTA CGGCCCCAGC CGCATCACCG GGACCGACCT TCACATCGTC
ATCGAGGGCG ACACGGCCGA CGGCGCCATC GCCTATAATG GTGGTGAGGT CCACCTGACC
GGCGGCTCCA TCCTGGTCAA GGGAACTTAC TCTGCGGCCT TAATCGCTTC TGTGGGCTCC
CGGTTGACGG CCACGAATGT CCAGATCGAC GTTCGCGGCG ACAACAGCAA CGGCGCATTC
GCCCAAGACC GGGGCACGGT GACGCTGACG GGCGGCCGCA TCACCACCTC CGGCGTGGGC
GGGCACGGCC TCTACGCCTA TAGCGATGGC ACCATCGTTG CGGATAACGT CTCGGTCACC
ACCGCCGGCA ACGACGCGGA CGGTGCCAGG GCCGAGTTCC CCGACGCCAC CGTCGCCCTC
ACCGGCGGAA CCTTCACCAC GTCGGGGGCG CTCGCGAATG GCCTGAGCGC GCAGGATGGC
GGCACGCTCA CCGCCACGAA TACGGCCGTG GCGGTGACGG GAGCCGGCGC CGCCGCGATC
CAGATCGTGG GCGGCACGGC GGTCGATCCG AGCGTGGTGA CCGTCACCGG CGGCAGCCTG
GCCTCCAGCC TGGGGCCCCT CATCCTGTCC GAGGGCGGCA TCGGCGCCAT CTCCCTGAAC
GGGCCGATCG CGACCACCTC GGGCATCGTC GGGGGCCAGG CCGCCCTCGC CACGGTGACC
GCGGGATCCG GGGGCGTGAC GCCCAGCAAC CTCACCCTCA ATTTGAACGG ACTGGGCGGG
GTCGCCGGCG CCTTGCGGGT GACGGGTACG GGTAACGTGG TCAACACCAC CTTCAACGCG
ACCAACTGGA CCGGCGATCT CATCGCCGAC ACCGGCAACA CTCCGAATAC CTCACTGGCC
GCGAGCCGGT GGACCGGTCA GGCGGCCAAC GCGGCCGATA TCGGCATTGA CGGGTCCAGC
GCCTGGACCA TCACCGGCAC GTCCAACGCC ACCGGCACGA TCACCAATGC CGGGCTGATC
CAGTTCGTGC CGCTGTCCAG CGGGTTCTCG ACGCTGACCA CGGGCAGCTA TGTCGGCCAG
GGCGGCCGGA TCGCCTTCAA CACCTATCTC GGCGCCGACA ACTCCCCCAC GAATTTGTTG
GTGATCAATG GCGGGACGGC GAGCGGCACG ACCGCGCTGT CGGTCACCAA TGCCGGCGGG
TCCGGCGCAC TGACCGTGGG CGACGGCATC CGCCTCGTGC AGGCGGTCAA CGGCGGCGCT
ACCCAGCCGG GCGCGTTCGC TCTCGCCGGG CGCGTCGCCG CCGGCTCCTT TGAGTATCTC
CTGTTCCGGG GCGGCAGCTC GGGCGCGCAG GACTGGTTCC TGCGCTCCAC CCTGAACGCG
ATCCCGGATC CGCCCAGCCC GACGCCACCG GCGCCAGAGC CGGTCATTCC GCTCTATCGA
CCGGAGGTTC CCCTCTACAC CCCCATCCCG GCCATCGGCC GCGACATGGG CCTGGCAACC
CTCGGCACGC TGCATGAGCG GGTGGGCGAG GAGATGAATA TCCCGAACCA GACAGCTTCC
GGGAAATTCG GGAACGGCAC CTGGGCACGG CTCATTGGCG AGAGTGGCAA CAGCAGTTGG
TCCGGCACCG TCGATGCCCG CGCCCGCAAC GCCAGTCTTG TTGGCATCCA GGCGGGCTTC
GATATCTATC GAAGCCTGCA CGACAATGGC CATCGCGACC ATGTCGGCCT CTATATCGCC
GAGACCAGCT ACCGCTCCTC CATCAGCGGC TTCGCATTGG GCCAGCAGAA CTTGCAGGTC
GGCCAACTGG CCCTGCAAGG GCCGGCGGCG GGCGGCTATT GGACCCATTT CGGCCCTTCG
GGCTGGTACC TGGACGCGGT GGTCCAGGAG AACTGGTTCG ATGCGAGGGC GACGTCGCTC
TACCAATCGG GGATGAGCAC CAGCGGCACG GGCTTCACCG CCTCGCTGGA GGGGGGCTAT
CCGATCCGCC TGAGCCGGCA TTGGCAGATC GAGCCGCAGG CGCAGATCAT TTACCAGACC
ATGTCGGTGA ACCGCAGCCG GGACGCTTTT TCGACGGTCG GGTGGGATGC AAATAACGCG
GTGACCGGAC GTTTCGGCGG GCGGCTGCAA TACACGACCC AAGATGGGCA AACGCTGTGG
CAGCCCTACC TCAAGGCCAA CCTCTGGCAC GGCTTCGGCG GCGTCGACCG GATCAGCTTC
GGGGATTCGC CGGCGATCGA GAACCGGTTC GGCAACACCT CGCTGGAACT GGGCGCGGGA
TTCACGGCCC GGATCACGCA GACCACCAGC CTCTATGGCC ATGTCGACCG TCGCTGGTCG
GTGGACGGCG CCGAGCGGTA CGCCTCGGTC CAGGGCGTCG TCGGGGTCCG GTTCAACTGG
TAG
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| Protein sequence | MYRVRTSPEG KATTDSERNY RSPISQLHAP KFRSGFSLSY SVIALGATLV FSGEAYGQCS
PLPPGSVNLT TGACTDDGVS RTSSTVNTPA IGVSGDGSYT GNGVIIATTA GSAFGAEVSG
LGHIVLSGGT LTTSGTDSTG ILVESGGTLT TQDGLTIETF AKGATGVSVL GAGASANLSN
TSVSVHGDTS FGLKANGGAI VGNDLTIKTA GTDGQAHGVL TETNGTIDLT RATITTTGAS
SEGLYAYGPS RITGTDLHIV IEGDTADGAI AYNGGEVHLT GGSILVKGTY SAALIASVGS
RLTATNVQID VRGDNSNGAF AQDRGTVTLT GGRITTSGVG GHGLYAYSDG TIVADNVSVT
TAGNDADGAR AEFPDATVAL TGGTFTTSGA LANGLSAQDG GTLTATNTAV AVTGAGAAAI
QIVGGTAVDP SVVTVTGGSL ASSLGPLILS EGGIGAISLN GPIATTSGIV GGQAALATVT
AGSGGVTPSN LTLNLNGLGG VAGALRVTGT GNVVNTTFNA TNWTGDLIAD TGNTPNTSLA
ASRWTGQAAN AADIGIDGSS AWTITGTSNA TGTITNAGLI QFVPLSSGFS TLTTGSYVGQ
GGRIAFNTYL GADNSPTNLL VINGGTASGT TALSVTNAGG SGALTVGDGI RLVQAVNGGA
TQPGAFALAG RVAAGSFEYL LFRGGSSGAQ DWFLRSTLNA IPDPPSPTPP APEPVIPLYR
PEVPLYTPIP AIGRDMGLAT LGTLHERVGE EMNIPNQTAS GKFGNGTWAR LIGESGNSSW
SGTVDARARN ASLVGIQAGF DIYRSLHDNG HRDHVGLYIA ETSYRSSISG FALGQQNLQV
GQLALQGPAA GGYWTHFGPS GWYLDAVVQE NWFDARATSL YQSGMSTSGT GFTASLEGGY
PIRLSRHWQI EPQAQIIYQT MSVNRSRDAF STVGWDANNA VTGRFGGRLQ YTTQDGQTLW
QPYLKANLWH GFGGVDRISF GDSPAIENRF GNTSLELGAG FTARITQTTS LYGHVDRRWS
VDGAERYASV QGVVGVRFNW
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