| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_4595 |
|---|
| Symbol | |
|---|
| ID | 9248476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | - |
|---|
| Start bp | 5447437 |
|---|
| End bp | 5450424 |
|---|
| Gene Length | 2988 bp |
|---|
| Protein Length | 995 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003682488 |
|---|
| Protein GI | 297563514 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.131343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTGCC CGCGCACCCG TCCCGTGAGT ACCGCGAGTA CCCCAACCCA GGCCCGTCAC
GCACGTCGCG TGCGACTCCG GGTGAGCATC GGTGAAACGA CCAGTGTGGT CGCCCGCACC
TGCCGCGTCG GGGGCCCGCT GTGCGAATGT GTGCACGTGA CTGGCAGGAA CACACAACCC
CCCGTCACCC GCCTCCGGGG TCGCGACACG GAGCAGCGGG CCCTCTCCGA CGCCCTGGAC
GACGCGCGGT CCCGCCGGGG CGCCTCCCTG CTCCTCTCCG GAGGCCCCGG GCGCGGCAAG
ACGGCGCTCC TGGAGCACCT GAGCGGGTCC GCGGGTGGTT TCACCGTGCT CCGCGCGGAC
GGGGTCGCCG ACGAGGCGGA CCTGCCCCTG GCCGGGCTCC AGCGCCTCCT CCACCCCCTC
GCGGAGGAGA GCGAGCGCCT TCCCGAGCCC CGGCGCGGCC TGCTCCGCGA CGCCCTGACC
CGGGGAGCGG TCGCCGACGC CGACCGGCTC GCCCTCTACA CCGGCCTGGT CGAACTGCTC
TCCCGCGCCG CGGCCGACCG CCCCCTCCTG CTGTGCGTGG ACGACGCCGA CCGGCTCGAC
GCGCCCTCGC TGGACGCCCT GGCCTTCGTC GCGCGGCGCC TCGCCGGAAC CCCCGTCGCC
GCCGTCCTCA CCGCGCGCGA GGGCCGCGGC AAGCCCGCCG GGGCCCGCGT GCCCGAGGCC
GACGCCGAGC CCCCTCCCGA CGCCCTCGTC CCCGGTGTCA CCGAACTCCC GCTCGCGCCA
CTGGAGGAGC GGGCGGTCCA CGACATCCTC ACCGACAGGG CCCCGGTCAC CCCGGCCTCC
GCCGTGCGCT CCGCCCTGGT CCGCGCCGCC CACGGCAACC CCGCCGCCGT CCTCGGCCTC
CTGCGGGGGC TGTCCCGGGC CCAGCTCCTG GGCGAGGAAC CCCTCCCCGC CCCGCCGCTC
CTGCCCGGCC GCCTGCGCGC CGGCTTCCTC GCCCCCTACC GCGATCTCCC CGAGCGGACC
CGCCGCCTGC TGCTGCTCGC CGCCCTCGGC GACGAGCCCC GCGTCCACCG GCTGCTGGAG
GCCTGCGAGG AACCCGGACC GAACACCACC GGCCCCGGAC CGACCGTCAC CGACCTCGAA
CCCGCCGAGG AGCGCGGCCT GGTGCGGGTG GAGGGCGACA CCGTCGTCTT CACCGACCCC
CTGGCGCGCG AGGCCATCGC CCAGGACGCC CCCGCCGGGC GACTGCGCGC CGCGCACCGG
GCCCTGGCCC GCGCCTGCGA CCCCGAACTC TCGCCCGCCG AGTTCGTCCG CCACACCGCC
TCGGGGGCCG ACGCGCCCGA CGCCGGGCTC GCCGAAGCCG CCACCGCCGC CGCCCGGCGC
GTCAAGCGGA TCGAGGGCCG CCTCGCCGCC TCCCACGCCT ACGAGCGCGC CGCCGACCTG
TGCCCCGACC CCGACGAGCG CGCCTGCCGA CTGAACACGG CCTCCTACGA GGCCTACATG
GCCGGGAGCT CGGCGCGCGC CACCCGGCTG CTCGCGCGGG CGCGCCCCCT GGCGGTGACG
GACCGGCGGC GGGCGACCTC CGACCTCATC GACGCCCAGA TCGCCATGCG CGGCGAGAAC
GCCATGGACG TCGCCGAACG CCTGCTCACC GTAGGCCGCG AACTCATCCC CCACGACCGC
TTCCTGGCCC TGCGCGCCCT CGTGCGCTCG GCCGACGCCG CCTCCCTCGC CGGGGACGCC
GTCCGCCACG GCCGGGCCGC CGAACTGGCC CTGCCCCTGG TCGGCCCGGA CGACCCGGCG
CCGATGCGCA TGGTCGCGTC CTTCCTGGAG GGGTGCGCGG TCTCCTTCCG CGGCGACTAC
CCCGGCTCCA CCCCGCTGCT GCGCGAGGCC ACCGGGCTGG CCGCGATCGC CAAGCCCTCC
GAACTGGTCT GGGCGGGCAT CAGCGGCCTG CGCCTGGGCG ACGCGCCGTT CGTGCGCTCG
GTGACCTCGC GCGCCGTCGA GGTCGGCCGC CTGCGCGGCG AACGGGCCAC CCTGCCCGCC
GCGCTGGGCT TCCTGGTCTT CTCCGAGTTC TGGAGCGGGC GCTTCCCCTC GGCCGCGGGG
ACCGCCCTGA CCGGCCTGCG GGTCTCCCGC GAGACCGGCC AGACCGTGTG GGCCACCCAG
CACCTGGCGT CCCTGGCGAT GATCGCCGCC ATCCAGGGAG ACGTGGACAC CTGCCGCATC
CGGGCGCGCG CGGTCGCCGC CCAGGCGGGG GAGAACAGCC TCGGCCTCGC CGCCGCCCTG
TCGGCGTGGG CACTGGCCGT CCTGGAGCTG TCCCGGGGCA ACGCCGCGGA GGCGTTCTTC
CGGCTGCGCG CCCTGGTCCA CGCCGCCCCA GGGCACGGCC ACCCCACCAT GCGGCTGCTC
ACCGCCCCGC ACTTCGTGGA GGCGGCGACC CGCATGGGCG AGACCGAGTG GGCGCGCACC
TCCCTGGCCG GGTACCGGCG CTGGGCCGAG TCGGTGGGCA GCCCGAGCAC GCTGGCGCTG
GCCGCCCGGG GCTCGGGCCT GCTGGCCGCG GGCGACGAGG CATGCGACCA CTTCGAGAAC
GCGCTGGCCC TGCACCGGGC CTGCGGCGAC GACGACGTCG AGCACGCGCG CACCCAGCTG
CTGTTCGGCG CCCACCTGCG CCGGGCCCGC CTGCCCGGCC GGGCCCGCGA GCACCTGTAC
AACGCGCTGG AGTCCTTCGA ACGCTTCGGG GCGCGGCTGT GGGTGCGCCA GACCCGCGCC
GAGCTGCGCG CGATCGGGAC CGCCGAACGC GGCCCCGACC CCGTCTCCAC CAGCGAGCTG
ACCGCGCAAC AGCAGCAGAT CGCCCGGCTG GTCGCCGAGG GGGCCACCAA CCGCGAGGTG
GCCGCCCACA TGTTCATCAG CCCGCGCACG GTCGAGCACC ACCTGCGCGG CATCTTCCGC
AAGCTCAACA TCAGGTCCCG CGTGGACCTG GCCCGCCTGT TCAACTGA
|
|---|
| Protein sequence | MPCPRTRPVS TASTPTQARH ARRVRLRVSI GETTSVVART CRVGGPLCEC VHVTGRNTQP
PVTRLRGRDT EQRALSDALD DARSRRGASL LLSGGPGRGK TALLEHLSGS AGGFTVLRAD
GVADEADLPL AGLQRLLHPL AEESERLPEP RRGLLRDALT RGAVADADRL ALYTGLVELL
SRAAADRPLL LCVDDADRLD APSLDALAFV ARRLAGTPVA AVLTAREGRG KPAGARVPEA
DAEPPPDALV PGVTELPLAP LEERAVHDIL TDRAPVTPAS AVRSALVRAA HGNPAAVLGL
LRGLSRAQLL GEEPLPAPPL LPGRLRAGFL APYRDLPERT RRLLLLAALG DEPRVHRLLE
ACEEPGPNTT GPGPTVTDLE PAEERGLVRV EGDTVVFTDP LAREAIAQDA PAGRLRAAHR
ALARACDPEL SPAEFVRHTA SGADAPDAGL AEAATAAARR VKRIEGRLAA SHAYERAADL
CPDPDERACR LNTASYEAYM AGSSARATRL LARARPLAVT DRRRATSDLI DAQIAMRGEN
AMDVAERLLT VGRELIPHDR FLALRALVRS ADAASLAGDA VRHGRAAELA LPLVGPDDPA
PMRMVASFLE GCAVSFRGDY PGSTPLLREA TGLAAIAKPS ELVWAGISGL RLGDAPFVRS
VTSRAVEVGR LRGERATLPA ALGFLVFSEF WSGRFPSAAG TALTGLRVSR ETGQTVWATQ
HLASLAMIAA IQGDVDTCRI RARAVAAQAG ENSLGLAAAL SAWALAVLEL SRGNAAEAFF
RLRALVHAAP GHGHPTMRLL TAPHFVEAAT RMGETEWART SLAGYRRWAE SVGSPSTLAL
AARGSGLLAA GDEACDHFEN ALALHRACGD DDVEHARTQL LFGAHLRRAR LPGRAREHLY
NALESFERFG ARLWVRQTRA ELRAIGTAER GPDPVSTSEL TAQQQQIARL VAEGATNREV
AAHMFISPRT VEHHLRGIFR KLNIRSRVDL ARLFN
|
|---|
| |