| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_2846 |
|---|
| Symbol | |
|---|
| ID | 8448459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 3113133 |
|---|
| End bp | 3113984 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 645041937 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IIB |
|---|
| Protein accession | YP_003202179 |
|---|
| Protein GI | 258653023 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00000799455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0158039 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGAACCG GGTCATCGAC AACGCGCCGA GCGGTCTTTC TGGACTTCGA CGGCACCTAC
GCCGACCACG GAGTGGTCCC GGACGCGCAC GTCGCGGCCG TTCGCGCCGC CCGCGCGACC
GGGCACCTGG TGTTCCTGTG CACCGGCCGG CCGCGGTCGA TGGTGGCGCC CGAGGTGCTG
GTCGAATTCG ACGGCCTGGT GGCGGCGGCC GGCGGCTACG TCGAGATCGA CGGGGCGGTG
CTCAGCGACC AGCGGTTCCC GCCCGAACTC GGCGCCCGGC TGGTGCGCCT GCTCGACGAG
CACGACGTCG CGTACCTGCT GGAGACGCCG GAGGCCGTGT ACGGGCCGCC CGGCGTGGAT
CGCCGGCTGG CCGACCTGTT GCGCCGGCAC CTGCGGGCCT CCGGCCATGA GGGTCCCCGG
GACATCCTCG ACGCGCTGCG CATGGCGCCC GAGCTGACCG AGGTCCGGTT CGGCAAGGTC
ACCTGCTTCG ACTCGCCCGA GCCGGTCGCC TCGCTGGCCG CGCAGGCCGG TCCGGAGATC
GGTGCGCTAC CCAGTTCGAT CCCGGACATG GGCGAGTCGG CCGGTGAGCT GTATCTGACC
TGGGTGCACA AGGCGGTCGG CATTGAAGTC GTCGTCGCGC ACCTGGGGCT GACCCGCGAG
CAGGTCATCG CGGCGGGCGA CGGTCTCAAC GACCTGGAGA TGCTCGAGTA CGCCGGTGTC
GGCGTGGCCA TCGAGGGCAG CGACCCCCGG GTGCTGGCCG CGGCCACCCA CGTCGCGGCC
GGACCCCAGC AGGCGGGCCT GGCCGTGGCC TTCGCCGAGC TCGGACTGAC GGGCGAGCCC
GTCGTCGGCT GA
|
|---|
| Protein sequence | MGTGSSTTRR AVFLDFDGTY ADHGVVPDAH VAAVRAARAT GHLVFLCTGR PRSMVAPEVL
VEFDGLVAAA GGYVEIDGAV LSDQRFPPEL GARLVRLLDE HDVAYLLETP EAVYGPPGVD
RRLADLLRRH LRASGHEGPR DILDALRMAP ELTEVRFGKV TCFDSPEPVA SLAAQAGPEI
GALPSSIPDM GESAGELYLT WVHKAVGIEV VVAHLGLTRE QVIAAGDGLN DLEMLEYAGV
GVAIEGSDPR VLAAATHVAA GPQQAGLAVA FAELGLTGEP VVG
|
|---|
| |