| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0341 |
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| Symbol | rpoH |
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| ID | 3931426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | + |
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| Start bp | 279854 |
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| End bp | 280720 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637900497 |
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| Product | RNA polymerase sigma-32 factor |
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| Protein accession | YP_506230 |
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| Protein GI | 88608622 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000788591 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAGAGC TCTTATTACC CGTTGATAAT TCTGAGTTTG ATGCCTATGC ACGGAAGATC
TTAGCAATTC CGATACTGCA GGAGGAAGAA GAACGCGAGC TTATAGATAG GTGGTTTGTT
CACAGGGATA TTTCGGCGGC TCAGAGGCTT GTTGAGGCCT ATTTGAGGCT GGTAGTTAAG
GTGACTGTAC GATTTAGAAA TTATGGCTTT CCTCTTATGG ATCTTGCTTC CGAGGGAAAC
ATTGGTCTGA TGAAGGCTAT AAAAAATTTT AACCCGACAC TCGGGCATGG AATCGCTACT
TATGCAATAT GGTGGATAAA AGCTGCTATA AATGAGTATG TCATAAGGTC TTGGTCCATG
GTGAAAATTG GTACGACTGC TGCTCAGCGG AGACTCTTCT TTAATTTGCG CAAGTTGAAG
AATTCTGGTA GTGTTGCTGG TCTGGATGAG AACCAGGTGG TGAAAAGGAT TTCAGAAATT
CTTGCAGTAT CAAAAAATGA TGTAGAGGAA ATGGAAAGGA TTCTAAATGC TCGGGATGTT
TCTCTGAATA TGCAGTTGGG CGAGGATGAT AGTTCGGAGG TTCACGATCT CGTTCCTTTT
CCAGAGGCAA ATCAGGAGGC TGTTCTTTTA GAAACACAGG AGAGACAGAT GAAAAGTCAG
TTGCTTTATG AGGCAGTTGA GGCACTTGAA GCGCGCCATA AAGAGATTTT TGTTGCCAGG
AGCCTAAGTG CAGTTCCTAG GACGCTTAAA GAGCTTGGGG AGAAATTTTC TATTTCTCAA
GAGAGGGTTA GGCAGATACA TGCTCGGGCA ATGAAGAAAG TGACAGAGTA TGTGGAAAAG
CATGGAAGAA AACTTGGGAT AGTATAA
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| Protein sequence | MRELLLPVDN SEFDAYARKI LAIPILQEEE ERELIDRWFV HRDISAAQRL VEAYLRLVVK
VTVRFRNYGF PLMDLASEGN IGLMKAIKNF NPTLGHGIAT YAIWWIKAAI NEYVIRSWSM
VKIGTTAAQR RLFFNLRKLK NSGSVAGLDE NQVVKRISEI LAVSKNDVEE MERILNARDV
SLNMQLGEDD SSEVHDLVPF PEANQEAVLL ETQERQMKSQ LLYEAVEALE ARHKEIFVAR
SLSAVPRTLK ELGEKFSISQ ERVRQIHARA MKKVTEYVEK HGRKLGIV
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