Gene NSE_0124 details

Gene Information

• Locus tag: NSE_0124
• ID: 3931756
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Neorickettsia sennetsu str. Miyayama
• Kingdom: Bacteria
• Replicon accession: NC_007798
• Strand: +
• Start bp: 101917
• End bp: 102408
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637900280
• Product: putative 16S rRNA processing protein RimM
• Protein accession: YP_506024
• Protein GI: 88608189
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.87226
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATGACA TGGTTTGTGC GGGGCGGGTT ACTTCTACGC ATGGCGTAAG GGGTTGTGTA 
CGCTTCCGTT CCTACATGAG TGTTGATTTT AAATTCCCTG GAATTGATGT ATCTATTGGC 
GGTGTTTCTT ACACCGTGTG CGGAGCGTTT AGCCGAGGGT TCCCCATGTT TGTCCTTACC 
CTGTCGCGTG TTGGTAGCGC ATGTGAAGCT GAAAAGCTGG TAGGGTTCGA TGTCTTTTTG 
TCTGAGTCAT TGCTTCCTCC GTTACAAGTG GGCGAGTATT ACTGTAAAGA TCTAGTGGGT 
CTGGCCGTAT ATGATCTCGA GGAATGTGTT GGTCATGTTT CGATGTTGTA CGATTTCGGT 
GCGGCTGCTG AGGTACTTGA AATTGTTCTT CTGTCCGGTA AAAAGGTCAT GATACCTTTT 
ACTAGTGCAT TTGTGGCGGA CATTGATTTA AATAAAAAGC GTTTAGCGGT TGTGTTTCCT 
CCAGAGATAT AG 

 

Protein sequence

MNDMVCAGRV TSTHGVRGCV RFRSYMSVDF KFPGIDVSIG GVSYTVCGAF SRGFPMFVLT 
LSRVGSACEA EKLVGFDVFL SESLLPPLQV GEYYCKDLVG LAVYDLEECV GHVSMLYDFG 
AAAEVLEIVL LSGKKVMIPF TSAFVADIDL NKKRLAVVFP PEI