| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_21351 |
|---|
| Symbol | sqdB |
|---|
| ID | 4780871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL1A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008819 |
|---|
| Strand | + |
|---|
| Start bp | 1791502 |
|---|
| End bp | 1792695 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640085432 |
|---|
| Product | sulfolipid (UDP-sulfoquinovose) biosynthesis protein |
|---|
| Protein accession | YP_001015955 |
|---|
| Protein GI | 124026840 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGTTT TCGTTCTTGG TGGTGACGGC TTCTGCGGAT GGCCTTGTGC AGTAAATCTT
GCTGACAAAG GTCATGATGT ATTCATCGTG GATAATCTGA GTCGTCGAAA AATCGATATA
GACCTTGAAG TTGAATCCTT AACTCCAATT ACAAGTATTG GAGAAAGGAT TAAAGCTTGG
TCTGAGATAG GCGGAAAACC TATTCAATTT ATTCATTTAG ACCTTGCCTC TGAATATCAA
AAGCTTTTAG ATCTGTTAAT CGAGGAAAAG CCGGATTCAA TAATTCATTT TGCTGAACAA
CGTGCTGCTC CATATTCCAT GAAAAGCAGC GCAACCAAGA GATATACAGT TGATAACAAT
GTCAATGGTA CTCATAATCT CCTTGCCGCA ATTGTTGAAT CTCAATTAGA TATTCACATT
GTTCATCTTG GGACAATGGG AGTTTATGGC TATGGATCTC ATAGAGGCGC GACCATTCCT
GAAGGTTACT TAAAAGTGGA AGTACCCCAA CCAGATGGCA GTCGTTTTGA GGAAGAAATC
CTTCATCCAG CAAGTCCTGG CAGCGTTTAT CACATGACAA AAACGCTTGA TCAATTGCTC
TTTCTTTACT ACAACAAAAA TGACCAGATC AGAATCACTG ATCTTCATCA AGGAATTGTA
TGGGGAACGA ATACTGATGT CACAAGTCGT GACCCAAGAT TGACTAATCG ATTTGACTAT
GACGGTGATT ATGGAACAGT GTTAAATCGA TTTTTAATGC AGGCGGCCAT TGGATACCCA
TTAACTGTTC ATGGTACTGG TGGACAAACA AGAGCTTTTA TACATATTCA AGATTCAGTA
AAATGTGTTC AATTGGCACT CGAGAACCCT CCTGAGAAAG GTGAAAGGGT CAAAATTTTC
AACCAAATGA CGGAAAGTCA CCAAGTTGGG GAATTAGCTA AAAAAGTAGC CTCTCTCACT
GGAGCAAAAA TTAATTATCT GCCAAACCCA AGAAACGAAG CGGTTGAAAA TGATTTGATA
GTTGATAATA GATGTTTTAT TGAGCTTGGA TTAGATCCGA CAACTCTCGA TAATGGACTT
TTAGAAGAAG TGGTTAATGT CGCGAAAAAA TTCTCCAATC GCTGTGATTT AAAACGAATA
CCTTGTGTAT CTGCATGGAC ATCAACCCAA GCAAAAGCAA TCCATAAATC CTAA
|
|---|
| Protein sequence | MKVFVLGGDG FCGWPCAVNL ADKGHDVFIV DNLSRRKIDI DLEVESLTPI TSIGERIKAW
SEIGGKPIQF IHLDLASEYQ KLLDLLIEEK PDSIIHFAEQ RAAPYSMKSS ATKRYTVDNN
VNGTHNLLAA IVESQLDIHI VHLGTMGVYG YGSHRGATIP EGYLKVEVPQ PDGSRFEEEI
LHPASPGSVY HMTKTLDQLL FLYYNKNDQI RITDLHQGIV WGTNTDVTSR DPRLTNRFDY
DGDYGTVLNR FLMQAAIGYP LTVHGTGGQT RAFIHIQDSV KCVQLALENP PEKGERVKIF
NQMTESHQVG ELAKKVASLT GAKINYLPNP RNEAVENDLI VDNRCFIELG LDPTTLDNGL
LEEVVNVAKK FSNRCDLKRI PCVSAWTSTQ AKAIHKS
|
|---|
| |