Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mthe_0398 |
Symbol | truD |
ID | 4462592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosaeta thermophila PT |
Kingdom | Archaea |
Replicon accession | NC_008553 |
Strand | + |
Start bp | 402471 |
End bp | 403772 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639699402 |
Product | tRNA pseudouridine synthase D |
Protein accession | YP_842831 |
Protein GI | 116753713 |
COG category | [S] Function unknown |
COG ID | [COG0585] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGGGGC TTATTCCAGC GGCTGAGCGC GACAAAGCTT TGGGCATGGA GATCTACATC ACCAGAACTC CTGGCATCGG TGGGGTTATA CGCAAGAGCC CCGAGGATTT CGTCGTCGAG GAGATATTTG ATGAGGATCA TTACGAGGGT GGGAGGTATC TCGTCGTCGA GGTCGAGAAG CGTGACTGGG ACACGCACAA ACTGGTAAGA GAGATCGCGA GGGCCCTCAG AATAAGCCAG AGGCGAATAA GCTTCGCAGG CACCAAGGAC AGGAGGGCGG TCACAAGGCA GAGAATGGCG ATCATGAACC TCGATGAGGA TGAGCTGATA GATCTGAGAA TCCCTGATCT CAAGATCTCT GTTCTCGGAA GAACAAACAG GCCTCTCGGT CTTGGAGATC TGAAAGGCAA CCGCTTCAGG ATTGTGATAA GAGATCTCGC AGTCGATGTA GATTCCGCCA GGGAGCGTAT GGAGCGCATA ACCTCTGAGA TACTGGAGAT CGGGGGAGTC CCGAACTACT TCGGCGTCCA GAGGTTCGGC GAGATCCGGC CTGTGACGCA TCTTGTTGGC GAGGCGATCG TGAGAGGAGA TCTGGAGCGT GCGGTATTCA CCTATCTCTC CATGCCATTT GATGGTGAGC CTGAGGAGAC GAGGGCTGCG CGTGAGGAGC TCTGGGAATC GGGGGATGTG AGAGCAGCGC TCAGGAGATA CCCGAGGCAT CTCACATACG AGCTGGCTAT GCTGAACCAT CTGGTCTCCA GTCCAGGAGA TCATGCAGGC GCTTTGATGG TTCTCCCTGA TAACCTGAGG AGGATGTTCG TTCATGCCTA CCAGTCATAT CTCTTCAACA GAATGCTCAG CATGCGTCTC CGGAGATGCC TCACATTCGA GCCGGTGGAA GGGGATATCG TCTGCTTCTC CAAAGATGGA ATGCCGGATG TGAGCAGGAT TGAGAGAGTG ACAGCAGAGA ACATCGAGGC CGTAAAGAGG TTGTTTGATC GAAAACGCGC ATTCGTCACC CTCCCGCTGA TCGGATATGA GTCTGAGCTT GCTGATGGCG AGCAGGGCGA GATCGAACGT AGCATCTTGG AATCAGAGGG GATTTCCAGG GAGAGCTTCT CTGTGAAGAC CTGTCCGGAT CTGAGCTCAC CCGGCGCGAG AAGGCCAGCT CTTCTGCAGG TTGATCCGGT CTTCGAACTT GGTGCTGAAA GCGCATGCAT TCGGTTCTCC CTTCCTCCTG GATCGTATGC AACGGTGGTG CTGAGGGAGT ACATGAAGGA TACCAGGGAT GTATCCGAAT GA
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Protein sequence | MEGLIPAAER DKALGMEIYI TRTPGIGGVI RKSPEDFVVE EIFDEDHYEG GRYLVVEVEK RDWDTHKLVR EIARALRISQ RRISFAGTKD RRAVTRQRMA IMNLDEDELI DLRIPDLKIS VLGRTNRPLG LGDLKGNRFR IVIRDLAVDV DSARERMERI TSEILEIGGV PNYFGVQRFG EIRPVTHLVG EAIVRGDLER AVFTYLSMPF DGEPEETRAA REELWESGDV RAALRRYPRH LTYELAMLNH LVSSPGDHAG ALMVLPDNLR RMFVHAYQSY LFNRMLSMRL RRCLTFEPVE GDIVCFSKDG MPDVSRIERV TAENIEAVKR LFDRKRAFVT LPLIGYESEL ADGEQGEIER SILESEGISR ESFSVKTCPD LSSPGARRPA LLQVDPVFEL GAESACIRFS LPPGSYATVV LREYMKDTRD VSE
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