Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msil_3241 |
Symbol | |
ID | 7090656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylocella silvestris BL2 |
Kingdom | Bacteria |
Replicon accession | NC_011666 |
Strand | + |
Start bp | 3555218 |
End bp | 3556102 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 643466549 |
Product | squalene synthase HpnD |
Protein accession | YP_002363510 |
Protein GI | 217979363 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.154532 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCGTGC AGATCGAAAA GGATAAGGCG ATCGAAGCGG CCGTCGCCGC GGTCCGTGCG CCGCAAGACT GCGCCGCCGC CGCGCAATCG CGCGGCAGCT CCTTCTATTT CGCCATGCGC ATGCTGCCGC AGGCGCAGCG CGACGCAATG TTCGAGATCT ATTCCTTCTG CCGCGCCGTC GACGACATCG CCGATGACGG TGGCCCGCTG GCGCCCCGCC GCGCGGCGCT GGCGAAATGG CGGCGCGACA TCGACGCCCT CTATGCCGGA TCGCCGCCGC CGGAGATGGC GCCTGGCCTC ATTGACGCCG TGGCGACGTT CCGGCTGGAG CGCGACGATT TTCATGCGGT GATCGACGGC ATGGAGATGG ATCTTGCCGG CGACATCCGC GCGCCCGATC TCGCGACGCT CGATCTTTAC TGCGACCGCG TCGCCAGCGC CGTGGGGCGG CTCAGCGTCA AAATTTTCGG CGTTCCGCAG GCTGAAGGCC GCCCGCTCGC CTTTCACCTT GGCCGGGCGC TGCAATTGAC GAATATCCTG CGCGATCTCG ACGAGGACGC CGCGATCGGC CGGCTCTATC TGCCGCGCGA GACGCTGGCC TCTGCCGGCG TTTCTTTCGC AACGCCCGAG GCGGCGCTGG CCGATCCCGG GCTCGACGCC GCCTGCGCGC CCGTGATCCT TCGCGCGAAG GATCATTTTC ATGAGGCGCG CGCAATCATG GCGCGCTGTC CGCGCCAATC CATCCGCGCG CCAATGATCA TGGCCGACGC CTATGAGCCG ATCCTTGCGG GGCTCGCCCA TCGTGGCTTC GCCCCGCCGC GCAAGCGCAT TCGGACGTCG AAATGGCGCG TCCTCGTCGC CATCCTGCGT CACGGCCTGA TCTGA
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Protein sequence | MSVQIEKDKA IEAAVAAVRA PQDCAAAAQS RGSSFYFAMR MLPQAQRDAM FEIYSFCRAV DDIADDGGPL APRRAALAKW RRDIDALYAG SPPPEMAPGL IDAVATFRLE RDDFHAVIDG MEMDLAGDIR APDLATLDLY CDRVASAVGR LSVKIFGVPQ AEGRPLAFHL GRALQLTNIL RDLDEDAAIG RLYLPRETLA SAGVSFATPE AALADPGLDA ACAPVILRAK DHFHEARAIM ARCPRQSIRA PMIMADAYEP ILAGLAHRGF APPRKRIRTS KWRVLVAILR HGLI
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