Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_1879 |
Symbol | |
ID | 5104147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | - |
Start bp | 1822060 |
End bp | 1822881 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640507765 |
Product | transketolase subunit A |
Protein accession | YP_001191943 |
Protein GI | 146304627 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3959] Transketolase, N-terminal subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAAG GTGGGCGTGA TGGAATTCCA ATATCAATAG AGGAATTAAA CAAGCTCAAG GAGGTAGCTG ACAGAGCTAG AAAGAACGTA ATTAGAATGC AATTCTACGA CCAATCAATT CACGTTGGTT CCTCCTTGAG CAGTATCGAG ATCCTAACGG CTCTCGAACT CAAGGTATTA AGAGACTCAA ATGATCCAGT CAACAGGGAC TGGCTAATCC TAAGTAAGGG CCACGCGGCT CCTGCTCTCT ATGCGGTTCT CCACGAGAAG GGACTAATCA AGGAAGAGGA ACTGTGGAAG ATCCAGGACA TCTCTGGCCT TCTACAAGGC CATCCCGAGA CCTTCATACC CGGAGTTGAC ATGTCAACTG GTAGCCTAGG GCAGGGACTT AGCTTCGGAA TTGGAGTTGC CACGGGAATA AAGATGGCCA AGGGAACTGG AAGGGTATTC GTCATCATGG GAGACGGAGA ACAGGACGAG GGCGAAGTGT GGGAGGCCAT GACCCACGCG GTCGCTCGCA ACTTGGACAA TCTGGTAGCT ATCATAGAGA TGAACGGATT CCAGCTGGAC GAAAGTACGA AGAACGTTAA GCCCAAGGAA TTCCTTCCTG AGGTATGGAG AGCCGTGGGT TGGAGAGTGT TTAACTGTGA TGGCCACGAC ATAGCAAGCG TTATCTCCAC CGTGGATGAG GCACTAAAGA CAGGGAAACC CGCGGTCATA TTCGCGGAAA CCAAGAGAGG TAAGGGGTTC ACCCCAATAG AAAACACAAA GAAGCAGAGG ACTGTTCCAG ATGTTGCAAG GCAGTTTCTC CTCAATTCGT GA
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Protein sequence | MEKGGRDGIP ISIEELNKLK EVADRARKNV IRMQFYDQSI HVGSSLSSIE ILTALELKVL RDSNDPVNRD WLILSKGHAA PALYAVLHEK GLIKEEELWK IQDISGLLQG HPETFIPGVD MSTGSLGQGL SFGIGVATGI KMAKGTGRVF VIMGDGEQDE GEVWEAMTHA VARNLDNLVA IIEMNGFQLD ESTKNVKPKE FLPEVWRAVG WRVFNCDGHD IASVISTVDE ALKTGKPAVI FAETKRGKGF TPIENTKKQR TVPDVARQFL LNS
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