| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1823 |
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| Symbol | |
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| ID | 5105386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1769843 |
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| End bp | 1770952 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640507722 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001191901 |
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| Protein GI | 146304585 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.248504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCTTC TAAGGGAGCT CGTGGAGATA GAGACCGTGA ACCCTCCCGG GTCTCATTAC
GAGGAATTTA CGTCGGTGAT GAGGGAGAGA CTTGGGGAAC TGGGATTTCA GGTAGAGCTC
GTGGAGATTC CAGACGAGTT CCTGGACAAG AACTACATTT ATTCCCCTAG GCACAGGGGG
AACAAGAGGG TCATACTCCT CGCGAGGAAT GACCCTGAAC CCAGGCTTCA CTTCAACTTC
CATTACGACG TGGTTCCTGC AGGGAACGGT TGGGTGACTG ATCCCTTCAA GCTGAAGGTA
GTTGAGGACA GGGCATACGG GAGAGGGACT TCTGACATGA AGGGGGCCAT CGCGAGCCTT
TACCTCGCGT TATCGGGTCA GGACTTCCCC GTAGAGGTTG CGCTTGTACC TGATGAGGAG
AGCGGAGGGC TAGGAACCAG GTACCTTGTG GATAAACTTC GGGTCAGGCC GAGACACGTG
ATCCTAGGCG AGCCGAGCTT CCCCGACCTG TACGTGGGTC ATTTCGGGAT CGTCCGGGGA
GTTGTGAGGG TGTTCGGGAA ACAGGTCCAC GCCAGCATGG CAAACCAAGG AGTTAACGCC
TTCCTTGAGG CCTCTAGGTT AGCCCTGGAG CTTCAGAGGA GGTACTCCTC GCTCTCGCTC
TCGCTCGAGG GATCAACGGT GCTCGGCGGA TACGTCGAGG GTTCAACGAG CGACGGGATG
GTTCCAGGGA CATTCGCCTT CAGTTTCTAT AGGTCAGTCC CACCAAAGGG AAGGGGTCCG
GACCTCGATC ATGAGATCGT GGACGAGACG GCCAGGGAAC TGGGGATCAA GCACGAGTTC
GAGATTAAGT CCTTCGTACC GGGTTCAATG ACCAGTCCTG ATTCCAGCTT GACGAGAGTC
GTCGAGGCGT GTATTAGGGA GATGGGCTGG GAACCTAGGA AGGAGGTGGC GAAGATTAGA
TATGACGCGG TATTCTACGG AGATATTGAC GCCGTGAACT TCGGCCCAGG GGAGCCGGGG
CAGGCCCACG TTGCGAATGA GTATGTTGAC CTTAGAAACG TAAAAAGGGT AAGCCAAGTA
TATAGTTGCG TGATGAGATC CATGTTGTAG
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| Protein sequence | MNLLRELVEI ETVNPPGSHY EEFTSVMRER LGELGFQVEL VEIPDEFLDK NYIYSPRHRG
NKRVILLARN DPEPRLHFNF HYDVVPAGNG WVTDPFKLKV VEDRAYGRGT SDMKGAIASL
YLALSGQDFP VEVALVPDEE SGGLGTRYLV DKLRVRPRHV ILGEPSFPDL YVGHFGIVRG
VVRVFGKQVH ASMANQGVNA FLEASRLALE LQRRYSSLSL SLEGSTVLGG YVEGSTSDGM
VPGTFAFSFY RSVPPKGRGP DLDHEIVDET ARELGIKHEF EIKSFVPGSM TSPDSSLTRV
VEACIREMGW EPRKEVAKIR YDAVFYGDID AVNFGPGEPG QAHVANEYVD LRNVKRVSQV
YSCVMRSML
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