Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_1792 |
Symbol | |
ID | 5105356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 1732262 |
End bp | 1732996 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640507691 |
Product | proliferating cell nuclear antigen |
Protein accession | YP_001191871 |
Protein GI | 146304555 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00590] proliferating cell nuclear antigen (pcna) |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTCA AGGTTATTGA CGCTAACTCG ATGGCCACGA TCTTCAGGAC CATAGGCGAG TTCATGCCCG AGATTACCTT GATAGGAACC AAGGAAGGCG TCAGGCTCAG CGGTGTTGAT CCAGCCAGGG TTGCACTCAT AGATATCTTT ATTCCGCAGG CCTATTTCCA CGAGTATGAG AGCGCGGAGA AGGAGACCGT TACTGTTAAG CTTGAGGAAA TAATAGCTTC CCTCAAGAAC GTTAAGAAGA ACGATAGCTT AACTTTCCAG TCAGGGGAGG ACAGGCTCAT GATAACCTTG GACGGTGACT TTGAGAGGAC CTTTTACCTA CCCATCCTCA TGGGTGAGGA GCCGAGTCTA CCATCGATCA AGCTGGAGTT CGCCTTTAAG GCCAAGATGC TCACCTCGAC CTTCTCCAAC GTCATGCAGA TACTTGGAGA CCTAGGCGAT GCCCTAACCC TGTCCGCAGA GGGAGGAAAG CTCACGTTCA TGGTTGAGGG CGATGTGGGC AGTTCCAAGG TGGAGTTGTC TGAGGAGTCT GGGACCCTGC TTGAGGCCAC CGGTGCAGAC GCGAAGGGGA CTTACGGCAT GGATTACCTG GTGAAGACCG CGAAGATGAG GAACTCTTCT GACATAGTGG AGCTCATGTT CGGTTCCCAA CTACCCATAA AGTTGAGGTT TGAGTTACCT CAGGAGGGTT ACGGTGACTT CTATATTGCC CCCAGGGCAG AATAG
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Protein sequence | MKFKVIDANS MATIFRTIGE FMPEITLIGT KEGVRLSGVD PARVALIDIF IPQAYFHEYE SAEKETVTVK LEEIIASLKN VKKNDSLTFQ SGEDRLMITL DGDFERTFYL PILMGEEPSL PSIKLEFAFK AKMLTSTFSN VMQILGDLGD ALTLSAEGGK LTFMVEGDVG SSKVELSEES GTLLEATGAD AKGTYGMDYL VKTAKMRNSS DIVELMFGSQ LPIKLRFELP QEGYGDFYIA PRAE
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