Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_1600 |
Symbol | |
ID | 5103964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 1546726 |
End bp | 1547991 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640507490 |
Product | beta-lactamase domain-containing protein |
Protein accession | YP_001191679 |
Protein GI | 146304363 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0760665 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTATA GTATAAAGAT ACTTGGCGGA GGCAATGAAG TAGGCAGAGC TGGGATAGAA ATATCCAATT CTAGCGAGAG CCTAATTCTT GACTACGGAG TAAATTTTAA TCAAAAGGAT GAACCAAACT TCCCCCTTCA GGAGTCACCT TCCAAGGTTA AGGGATTCGT GGTCTCACAT GCCCACTTGG ACCACGTTGG GGCCTTACCC ATTTACCAGA TATCCAGTAG TAAACCGGTT TACGGAACTG GGATCTCGAA GTACATTACT GAGTTGATGT TGAAGGATTT CATCAAACTG TCTGGACCAA AGGTCCCCTT TGAGTGGGTT GAAGTGAAGA AGACTATGGA TAACTTTAGG ACGTTCAATT ACGGTGAGGA AGTGGAGATA GGAGGGTTCA CCGTAACAAC TTCAAGCGCG GGACACATAC CCGGTAGCGC CATCACAGTT GTGAAAACGG AAAAGGGAGA CATAGCCTAT ACTGGAGACA TAAACGTGAC CATGGCAAAA CTTGTGAAAC CAGCTGAACT GGAAGTAATG AGAAAGTCTA GGGTTATCAT CACCGAGGCC ACGTACGGCA AGTTTAACCA TCCCACCAGG AAAAGCGTTG AGGAGGAGTT TTACGCCTCC GTAATGGAAG TACTTGAGGG CGGAGGGACG GTCCTTGTCC CAGCGTTCAG CCTTTCCAGA AGCCAGGAAA TACTTTCAAT TCTTGCTGAG AAGAACATAC CCTACCCCGT GTATTATGAC GGGCTTGCTA GAACAATAAT GGAGATCATG ATTGATAACA GTCAATACAT AAATAACAAG GAGGCCTTGA GGAAGGCCTA TGATGAGTTC CAATACGTGA AGGGGTGGGA GGATAGGAGA AAGGCATGGA GATCAAATGG AGTTATAGTT GCTAGCGCAG GAATGCTAAA GGGCGGACCA GCTGTATACT ATTTCAAGAA GATAGCTGAC AGTCAAAAGA ACGCGGTGTT CCTCGTGAGC TATCAGGCTG AGAATACTCC CGGAAGGAAG CTATTGGAGC TAGGTAAATT TGATGACTCC TCACCCTTGT TAAAGGCAAG GCTACAGATG TTCGACTTCT CCAGTCATGC AGGGAAAAAT CAGCTACTGG ACATAGTTAA GACCTCAGAA GCCCTTGAGA AGATAGTTGT AGTACATGCG TCTCCAGATA GTGCCCAGGC TTTCTCGGAC TACGTGAAAG AGAAGTTGGG GGTAGAAGTT TTAGTACCAG AAAATGGACA AGAAATCCGA CTATGA
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Protein sequence | MDYSIKILGG GNEVGRAGIE ISNSSESLIL DYGVNFNQKD EPNFPLQESP SKVKGFVVSH AHLDHVGALP IYQISSSKPV YGTGISKYIT ELMLKDFIKL SGPKVPFEWV EVKKTMDNFR TFNYGEEVEI GGFTVTTSSA GHIPGSAITV VKTEKGDIAY TGDINVTMAK LVKPAELEVM RKSRVIITEA TYGKFNHPTR KSVEEEFYAS VMEVLEGGGT VLVPAFSLSR SQEILSILAE KNIPYPVYYD GLARTIMEIM IDNSQYINNK EALRKAYDEF QYVKGWEDRR KAWRSNGVIV ASAGMLKGGP AVYYFKKIAD SQKNAVFLVS YQAENTPGRK LLELGKFDDS SPLLKARLQM FDFSSHAGKN QLLDIVKTSE ALEKIVVVHA SPDSAQAFSD YVKEKLGVEV LVPENGQEIR L
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