| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1224 |
|---|
| Symbol | |
|---|
| ID | 5103838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1198504 |
|---|
| End bp | 1200603 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640507116 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001191309 |
|---|
| Protein GI | 146303993 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTAAAT ATTCTTTTGG ACTTATGGAT ATATTCGAAG CCATATCAAA TGAGACGAGA
AGGAGGATAA TCCAGTCACT ATCGACTCCG AAAACCTTCT CTGAGTTGGC GAACGAGCTG
GGGTTGGACA GTCCTAGTCT CTCCTTTCAC CTCCGTAAGC TTGGCGGGCT AGTCACTAAA
AATGGAGATG GAACTTATCG CCTGACCGAT GATGGAGTAA AGGCATTGAA CCTGTTGTCC
ACGATAAGTT CTGGGGATAC TCGCCTCTTT CCCATTGTCG TGGAACACTT GAATTACGTG
AAGATTGACG ATGAACTTCT GGTTAAGCTC AGAAATGAAG GTAGAAAGTT AGTAGTCAGA
AAGGTTAAGA ACCTGGACCT GTCTGAGGTA AATTCCTCAT TACTTAATGA GGTCCTGGAA
GTCATAGAGA ACGTGGACAA TCTGTCGTGT TCCAATGACA CGCTCTCACT AATTAAGGAC
AGAATTAAGG GAAAGTATAA CTTGTTGATA GCAGACCAAG AGAAGTTACC AAACGAGACC
AAACACGAAA ACCCCTCTCC CGAATCCTTA TTGACCAGCT TTCTCTCCTA TACTATCTCG
AAATTACCTG TCCTGAGTAA TTTGCACGTA GTCTATGATG ATCAAATTCC CCTCTCTAAC
ACCCTTGAAA TAAACTTGAG TGGGGGATTA TCCAACTCCA GGAGAACTTA CACTTACGAG
GACTTTGCTA GGAGGGTGAG GAAGACCGTA ACTTTCCTTA AGCAAAACGG GCTCGAGGGG
AAGAACGTTG CATCAATTGC CTGGAACACA AGCAGACATC TGGAACTCTA TTTCGCAGTA
CCTCTCAGTG GTGGAGTCCT TCACACGGTA AACGTGAGGT TTCACCCAAG GGAAATGGAT
TACGTCGTCG AAGAGATGCA GGACTCCGCA GTTTTCATGG ATGAGGACAT AGAGGCATCA
CTCAACGTGA AAACCTTCAG GCTGAATGAG TCCTACGACG AGATAATTGA TTCGCAGGAG
CCGGCGCAGG AACTTCCCGA TCTTGAGGAA AAGAGGGGTG CCGTAAGCTG TTTCACCTCA
GGCACCACGG GTAAACCGAA GGGAGTGATC TACAGCCACA GGAGCATTTT CATCCACTCC
CTTTCCCTGC TGGCAGGTGA CGTTCTGGGT CTCTCCTCGA ACGACGTGGT CATGGACGTT
GTACCCATGT TTCACATATC AGGGTGGGAC ATACCCTTCG CCTCTCTCAT GACTGGAGCA
AAACTGGTTC TTCCTGGAAT TAGACCCAAG CCCAGGGACC TGGTGGAACT CATCAAGGAA
GAAGGGGTCA CCCTGGCAGC CGGTGCCCCC ACTGTCTGGA TTGACGTCAT GAACTACGTG
GAGAAGGAGA GGGAGGACCT AGGTAAGCTC AGGACGGTGG TGATGGGTGG GGCTGAGCCA
CCCAAGGGAT TGATGGAGAG AATGAGAAAG CTGGGCGTTA GGACCTACCA CGCCTGGGGG
ATGACCGAGA CCGAGGCCAT AGCGACGGTG AATAGGAGCG ATGATCTTAA CGTCCTGACC
AAACAGGGTT ACCCCATCTT CGGGTTTGAG ATATCCCTCC TGGACCCAGC TGGGAGGGAG
TTACCCTGGG ATGGGAAAAC CATGGGCGAG CTTGCCGTTC GAGGTGCGTT CGTTACGGGT
AGATACTTCA AGGGGGAGGC AAAGTTCACA TGGTTCAGGA CAGGTGACAT TGCCGTCGTG
GACCCCGACG GAAACGTGAA GGTCGTGGAT AGGCAGAAGG ACCTGATCAA GAGCGGGGGA
GAGTGGATCA GTAGCGTCCA GCTCGAGAAC GCGATCATGT CCTTCCATAA GGTTTCAGAG
GCTGTGGTTG TGGGAGTTCA TGACGAAAGG TGGGGAGAGA GGCCTGTCGC CCTAGTAGTC
CCCAAGGAGC CCACTACCCC ACAGGAAGTT GTGGAATACC TCAAGTCCTT GAACGCCTTT
CCCAACTGGT GGATTCCCGA CAGGATAATC TTCGTGGACT CCATTCCCAA GACGAGCACG
GGCAAACTAG ACAAGAAGGT GGTAAGGGAA GAGGTCAAAA AACTCCTACA GAGCCCTTGA
|
|---|
| Protein sequence | MCKYSFGLMD IFEAISNETR RRIIQSLSTP KTFSELANEL GLDSPSLSFH LRKLGGLVTK
NGDGTYRLTD DGVKALNLLS TISSGDTRLF PIVVEHLNYV KIDDELLVKL RNEGRKLVVR
KVKNLDLSEV NSSLLNEVLE VIENVDNLSC SNDTLSLIKD RIKGKYNLLI ADQEKLPNET
KHENPSPESL LTSFLSYTIS KLPVLSNLHV VYDDQIPLSN TLEINLSGGL SNSRRTYTYE
DFARRVRKTV TFLKQNGLEG KNVASIAWNT SRHLELYFAV PLSGGVLHTV NVRFHPREMD
YVVEEMQDSA VFMDEDIEAS LNVKTFRLNE SYDEIIDSQE PAQELPDLEE KRGAVSCFTS
GTTGKPKGVI YSHRSIFIHS LSLLAGDVLG LSSNDVVMDV VPMFHISGWD IPFASLMTGA
KLVLPGIRPK PRDLVELIKE EGVTLAAGAP TVWIDVMNYV EKEREDLGKL RTVVMGGAEP
PKGLMERMRK LGVRTYHAWG MTETEAIATV NRSDDLNVLT KQGYPIFGFE ISLLDPAGRE
LPWDGKTMGE LAVRGAFVTG RYFKGEAKFT WFRTGDIAVV DPDGNVKVVD RQKDLIKSGG
EWISSVQLEN AIMSFHKVSE AVVVGVHDER WGERPVALVV PKEPTTPQEV VEYLKSLNAF
PNWWIPDRII FVDSIPKTST GKLDKKVVRE EVKKLLQSP
|
|---|
| |