| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1186 |
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| Symbol | |
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| ID | 5104482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1156194 |
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| End bp | 1156964 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640507078 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001191271 |
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| Protein GI | 146303955 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.757811 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCCAAT TCATAAACTA CCTAGAGGCT GTCCTAGTAG TTGCAATCTC GTTTGTGGTA
GCTAGGATAC TTGTAGTAGT TGTGAAGAGA AGACTACATG GAGAACTTCC GGTTCACGTC
ACCCAAAACT TAACGAAGGG GATCTACTAC GCTCTGATCG CCGTGGGAAT TGGAATAGCC
ATAGGAATTA CAGGAATCAA CGTTACTGGA CTTCTAGTGA CTGGTGGAGT CGTGGGCATT
ATCCTTGGTC TAGCCCTTCA GAGCACTCTT TCAAATTTCT TTGCAGGGTT ACTAATTATT
TTTGAGAAAC CCTTCACAGT GGGACAAGTC GTGAATTACC AGGGAGTAAT AGGCACAGTC
GTGGACATTG GTCTCCTTTC CACAAAGCTA TACTCTTGGG AAGGACACTT CGTTAGGGTT
CCGAACAGCG TGCTTTTCAC GTCTCAGCTC GTGAACTACA GCAAGTCGAT AGTGAGGCTG
GTGAGGATTC AATTCACTGT ATTTCAGGAA AGTGATCTAA ACAGAATCAT GGAGGCAGTG
AAAAATAAGC TCAATGAGCA GTGGTATGTC CTAGTGAACC CAGAGGTAGT CGTTTTCCCC
ATTCAATTTA CGGAGAACGG AGTCCAGATT GAGGCTAGAG CGTGGACACC CCAAAGCACG
TGGTTTGAGC TATACCGGAA TATTGGACAG GTGATAGATC AAGCTCTTAA GGAGCTGGGG
GTTAGATACG CCTACAAAAA GGTTATCTTG GATGAGGATG GGAAGAGGTA G
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| Protein sequence | MIQFINYLEA VLVVAISFVV ARILVVVVKR RLHGELPVHV TQNLTKGIYY ALIAVGIGIA
IGITGINVTG LLVTGGVVGI ILGLALQSTL SNFFAGLLII FEKPFTVGQV VNYQGVIGTV
VDIGLLSTKL YSWEGHFVRV PNSVLFTSQL VNYSKSIVRL VRIQFTVFQE SDLNRIMEAV
KNKLNEQWYV LVNPEVVVFP IQFTENGVQI EARAWTPQST WFELYRNIGQ VIDQALKELG
VRYAYKKVIL DEDGKR
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