| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1111 |
|---|
| Symbol | |
|---|
| ID | 5103584 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1038999 |
|---|
| End bp | 1039646 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640507005 |
|---|
| Product | DNA binding domain-containing protein |
|---|
| Protein accession | YP_001191198 |
|---|
| Protein GI | 146303882 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2452] Predicted site-specific integrase-resolvase |
|---|
| TIGRFAM ID | [TIGR01764] DNA binding domain, excisionase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.385151 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGAAAC TACTGAGACC CAGGGAGGCT TGCCAACTGC TCGGCATTTC ATACACAACC
TTGTTAAGAT GGATTAGGGA AGGAAAAATT AGGGCAATAA CAACTGAAGG CGGGAAGTAC
AGAATACCCT ACGGCGAGGT GAAAAAATAC CTAGAAAGAA GGGAGGAAAT AAGGGCAGTA
ATTTACGCAA GAGTATCCTC AACAGACCAA AAAGAGGATT TAGAGAGACA AATAAACTAC
CTAACGAACT ACGCAACAGC AAAAGGTTAC AAGGCAATAG AAATAATAAA AGATATTGGA
AGCGGATTAA ACACACAAAG GAAAGGTTTA CTCAGACTAT TCAAACTAGT CGAGGAAAGA
AGCGTCGACG TCATACTAAT AACCTACAAA GATAGGCTAA CAAGATTCGG ATTTGAATAC
CTTGAAGAAT TCTTCACAAC AATGGGTGTT AAGATTGAAG TAGTTTTCGG AGAAGAACCA
AAAGATTCTA CACAAGAACT AGTTGAAGAC TTAATCTCCA TCATCACATC ATTCGCTGGA
AAAATTTACG GAATGAGAAG CCATAAAAAA ACACTCCTAG TTCAAGGTGC AAAAAAACTA
ATAGGTGAGT TAAGTGGAGA GGACGGTGAA GTTAAGAGTC AAGGTTAA
|
|---|
| Protein sequence | MEKLLRPREA CQLLGISYTT LLRWIREGKI RAITTEGGKY RIPYGEVKKY LERREEIRAV
IYARVSSTDQ KEDLERQINY LTNYATAKGY KAIEIIKDIG SGLNTQRKGL LRLFKLVEER
SVDVILITYK DRLTRFGFEY LEEFFTTMGV KIEVVFGEEP KDSTQELVED LISIITSFAG
KIYGMRSHKK TLLVQGAKKL IGELSGEDGE VKSQG
|
|---|
| |