| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1075 |
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| Symbol | |
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| ID | 5104456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1003623 |
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| End bp | 1004474 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640506970 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_001191163 |
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| Protein GI | 146303847 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAACAAAC AACTTGATGA GATTTTCAAG CGGGGCAGCA CCACTTATTA CAACAGTACC
CTGTTCTTTC CACCCAAGAT CAGGGAAGAC GTGACGAAGC TTTACGCCTT TGTGAGGGTC
TTTGACGACC TAGTGGACAG CGTTCCACAG AGGAGGGAGG AGTTCTACGC GTTGAGGAAG
TTTTATGAAA GGGAGAGGGA TGGGTATAAC ACGGGGAATG CGGTTCTCGA GAACTTTGTG
GAGCTCATGA GGAGGAAGGA CTTCGACGAG GAGTGGGTCG AAGCTTTCCT GAACGCCATG
GAGACTGACC TTCACAAGAG GGTGTATTAC ACCCTAGGGG AGACGCTGGT GTATATGTAC
GGCTCGGCTG AGGTTATAGG CCTCTTCATG ATGAAGATCT TGGATCTTCC TAAGGAGGCT
GAACCCTACG CTAAAATGCT TGGGCGGAGC ATGCAGTACC TGAACTTTAT CAGGGATGTC
AAGGAGGATG AGTATCTAGG AAGGCAGTAC TTACCAGTCG AGGACATGGA GAGATTTGGC
GTTGAGGGGC TCCAGTGCAC CGACGGTTTC AAGGAATTCA TGAGGTTTCA GGTTGAGAGA
TACTTGGATT TCGAGAGGGA GGCAGAGAGG GGTTATAGGT TCATACCCAA CAGGTATCTG
ATACCGATCA AGACGGCCTC GGAAATGTAT AAGTGGACAG GGCTAACCAT AAGGGCCTCT
CCCTGCATTG TCCTCTCTAG GAAAGTGAAG CCCAGGAAAA GGAAGATAGT TCTCTCGGTC
ATGAAGAACT CTGTGGGTGT GTATCTATGG AGATCCCTTT CCTCATTGGT AGGTTTGCCT
ACTCTGAGAT AG
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| Protein sequence | MNKQLDEIFK RGSTTYYNST LFFPPKIRED VTKLYAFVRV FDDLVDSVPQ RREEFYALRK
FYERERDGYN TGNAVLENFV ELMRRKDFDE EWVEAFLNAM ETDLHKRVYY TLGETLVYMY
GSAEVIGLFM MKILDLPKEA EPYAKMLGRS MQYLNFIRDV KEDEYLGRQY LPVEDMERFG
VEGLQCTDGF KEFMRFQVER YLDFEREAER GYRFIPNRYL IPIKTASEMY KWTGLTIRAS
PCIVLSRKVK PRKRKIVLSV MKNSVGVYLW RSLSSLVGLP TLR
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