| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0879 |
|---|
| Symbol | |
|---|
| ID | 5103525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 812318 |
|---|
| End bp | 813592 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640506782 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001190975 |
|---|
| Protein GI | 146303659 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2308] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.379593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCAA TAAATCGCAG ACTAATGGAT AACATTACCG TCCTAGAGAA TAAAATTTTT
GATTTAAGCA GGTTGGTGAA CTTACAAGCT TACATGGAAG GCTTCACGTT CTATACTTCT
TCAAGGTACA GGGGTATACC CATCGACGTT ATTCCTAGAG TTATTAGTTC AGATTTTTAC
TCTAGGATAT CCGATTATCT AGTTAAAAGG AACCTAGTTC TTAACCACTT GGTCAAGGAA
ATTTACCAGG AGAAATCCGT GCACATACCT GATTGGATAG TCAAGACTAC ACCCTTTTTC
AAACCGGAAA TGATGGACTT CTCCCCACCC AAGGGAATAT ACATCTATGT GAATGGTGCT
GATATTGTTA GAGTAAATGG TGAACCCTAC ATTCTTGAGG ACAACGTAAG GGTGCCCTCA
GGAATAGCCT ATTCTTATAG GGCATTCGAA TACGTTCATC GATTTTTACC TGAACTATCT
CAGGGTTACA GCGTGGAGGA ACCATCGGGT TTAGAATATC TTTACGATAC ACTTCGCTAC
GCGAGTGGAA GCAAGGATCC CGTAATCGTG CTTTTAACGG ACGGTCCCCT AAACTCCGCT
TACTTTGAAC ACAGGTTCAT TTCTGACAAA CTCGGGTTTG TGTTGGCAGA GCCCAAGGAT
ATACAGGTGA ACCAGGGAGA AGTTGTGGTA AAGACGTTAG ATGAGGGGGA AGTTCACGTT
GACATAATAT ACAGGAGAAT TGAGGACCTT GAGTTGCTCA CTCCAGATTT GATGAGGGCA
TATCTACGCG GGTGGGTTAC CATTGCCAAT GCCCCAGGCG TCGGAGTAGC TGATGACAAG
GCAACCTTCG TTTGGATACC ATTCCTAGCT GAGAGATATG GAATTTCCCT TAAAGAGGTT
ACACAGCCCT TTACCATATG CCTATATGAA AGGGAGAACC TTCAAAGGGT GATTAATAAC
CCCTCGAGTT ACGTGATAAA GAAGAGGGAA GGCTATGGAG GCATTGGTCT CTCCATAATG
AAGGATGAGA ACGCCAGTGT CCTAAAGGAG TTGGTAAAGG AGTATGAGAA CTTCATAGCG
CAAGAGGTTC TCGATTTCGA CACCGTGGTC TCTGCGATAA ATGACTCGTT TTACGAGACT
TTTGCAGATT TCCGCTTCTT CACATATTAC GATAGGGTGG CCACAGCAGT TTTAAGTCGA
GTCGGTGTGG TTGGAAGTAG GGTAACAAAT AACTCTTCTG GAGGGATGGT GAAACCGGTG
TGGATTACGA GGTAA
|
|---|
| Protein sequence | MDPINRRLMD NITVLENKIF DLSRLVNLQA YMEGFTFYTS SRYRGIPIDV IPRVISSDFY
SRISDYLVKR NLVLNHLVKE IYQEKSVHIP DWIVKTTPFF KPEMMDFSPP KGIYIYVNGA
DIVRVNGEPY ILEDNVRVPS GIAYSYRAFE YVHRFLPELS QGYSVEEPSG LEYLYDTLRY
ASGSKDPVIV LLTDGPLNSA YFEHRFISDK LGFVLAEPKD IQVNQGEVVV KTLDEGEVHV
DIIYRRIEDL ELLTPDLMRA YLRGWVTIAN APGVGVADDK ATFVWIPFLA ERYGISLKEV
TQPFTICLYE RENLQRVINN PSSYVIKKRE GYGGIGLSIM KDENASVLKE LVKEYENFIA
QEVLDFDTVV SAINDSFYET FADFRFFTYY DRVATAVLSR VGVVGSRVTN NSSGGMVKPV
WITR
|
|---|
| |