| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0839 |
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| Symbol | |
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| ID | 5105199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 768427 |
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| End bp | 770472 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640506743 |
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| Product | DNA topoisomerase type IA central domain-containing protein |
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| Protein accession | YP_001190937 |
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| Protein GI | 146303621 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0618738 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCG TAATCACGGA GAAGCCCAGC GTTGCGCTGG ATATAGCGAG GGCCCTGGGT
AAGCCAACGA GAAGGCAAGG TTACCTCGAG GTTGGGGAAT ACCTAGTTAC GTGGACCTAC
GGTCATCTCC TCGAGATTGG CGAGATTGCG CCGAAGAGGT GGAATTTGAA GGATCTTCCC
ATTTTCCCTG AGAAGTTTGA GTACGACTTG ATCAAGGGTA AGGAGAGTCA GTTCAAGGTT
GTGAGGAAAC TGCTTGAGGG AGCTGACGCG GTAATAAACT GCGGTGATGC CGGGAGAGAG
GGCGAGCTCA TAGTGAGGGA ACTCCTCGAG TTCACGGGAT ATCGCGGGAA AGTGTTGAGG
CTCTGGACCT CGGAGGCCCT CACACGGGAC GTGGTGTTGA GAGAGCTCAG GAGATTGAGG
CCAAGCTCGG AGTTTGACAG CCTCTACTAC AGTGCCCTAG CCAGGCAGAA CGGCGACTGG
ATCGTGGGGA TTAACCTGAC CAGGCTCGTC ACCTTGAAGG CAGGCGGTGG GGAGGTCTGG
AGTGTTGGGA GGGTCCAAAC TCCCACCCTC GCGATGATCG TGAAGAGGGA CAGGGAGATA
GAGGCGTTCA AGCCAGAGAT CTACTACGTT GTGCTCGCGG GGTTTGAGGG AGAGATGAAG
GGTGTGATGT TGAGGAATGG GGAGGAGGCA AGACTCGCAA GGGAGGAGGC GGAGCAGGTC
GTGAATGCCT TGAAAAGCGT GAGGAGCGGG AGAGTTGAGA AAGTGGACGT GGAGAGAAGA
GAGGAGAGGC CCCCACTACT CCACTCGCTC ACTTCCCTGC AGAGGGAGGC AAACACGCTG
TATGGCCTGT CCGCAAAGAG GACCCTCGAC GTTGCCCAAT CCCTGTACGA GGAGTGGAAG
CTCATAAGTT ATCCCAGGAC TGACGCACGC TACCTTGGGG AGGGGAACAG GGATCTGGTT
AAGGACGTCT TAAGGAAGCT TGGAAGGGGA GAACTGGTCC CTAGGGTAGA CCGCGTGGGG
AAGAGGGTAT TTGATTCCTC AAAGCTCACT GACCACCACG CAATCATCCC GCTGGATAGG
CCACCCGAGA ACCTTCCGGC AATTCACAGG AAGGTGTACG ACCTCGTGTA CAGAAAGTTT
GTTGGGGCCT TCATGGACGA TTACGTGTAT GAGTTGCAGA GGGTATTCAT AAGACTTGAC
GGTGAGCTCT TCCTGGTTGA GGGAAAGAGG AACCTCCAGC TGGGCTGGAT GGAGCTTTAT
CCCCACGAGG ATAACCCCCT GAAAATCCCG AGCGGGGAGG TGAGGAAGGA GTGGGTGAAG
GCCGAGGAGA GGCAGACCAA ACCCCCCGCA AGGTTCACCG AGGCCTCCCT TCTAAGGGAA
ATGGAGAGGC TAGGGCTGGG GACACCGGCG ACCAGGGCCG GAATAATAGA GACACTCCTC
GAGAGGGGTT ACGTGGAGAG GAGGGGGAAA TCCCTTTACT CCACGGATAA GGGGAGAGAA
CTCGTGGATA AGCTGGGGGA TAGCAAGGTT GTTAGCCCCG ACATGACGGC GGAGTGGGAG
AGGCAACTTG AGGAGATCTA CGTGAAGAGA TTGGGGGAGA AGGGGTATCA AGAATTCATG
GAGGGAATAA GGAGGTTCAC AAGGGAGGAG GTCGAGAGGC TCATGAAGAG AGAGTTTAAG
GTGGAGAGAA GGGCAACCCC TGAAATGCTG AGGTTAGCTA GGGCCGTGTC CAGGGATCTC
GGGGTTAAGC TTGAGGGAAC TGGGATGGAG GAGGTAAAGA GGTTTCTGGA TGAGAACCTT
CCAAAGATGA GGATTACGTG TAAATGCGGT GGGGAAGTGG TAGGGTTTTC AAGAGGGTGG
AAATGCAGGA AGTGCGGGAC AGTGGTGTGG AGGGAAATAG CTGGGAAGAA GATAACCTTC
AGGCAGGCTA AGTCCTTGTT TCAAGGAAAG GAGTTGAAGA TGAAGGGGTT CAGATCTAGG
ACGGGGAAGA GATTCAGTGC AACCGTATAC CTAGAGGACG GGAAGGTAAA GTTCAAATTT
GAGTGA
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| Protein sequence | MKLVITEKPS VALDIARALG KPTRRQGYLE VGEYLVTWTY GHLLEIGEIA PKRWNLKDLP
IFPEKFEYDL IKGKESQFKV VRKLLEGADA VINCGDAGRE GELIVRELLE FTGYRGKVLR
LWTSEALTRD VVLRELRRLR PSSEFDSLYY SALARQNGDW IVGINLTRLV TLKAGGGEVW
SVGRVQTPTL AMIVKRDREI EAFKPEIYYV VLAGFEGEMK GVMLRNGEEA RLAREEAEQV
VNALKSVRSG RVEKVDVERR EERPPLLHSL TSLQREANTL YGLSAKRTLD VAQSLYEEWK
LISYPRTDAR YLGEGNRDLV KDVLRKLGRG ELVPRVDRVG KRVFDSSKLT DHHAIIPLDR
PPENLPAIHR KVYDLVYRKF VGAFMDDYVY ELQRVFIRLD GELFLVEGKR NLQLGWMELY
PHEDNPLKIP SGEVRKEWVK AEERQTKPPA RFTEASLLRE MERLGLGTPA TRAGIIETLL
ERGYVERRGK SLYSTDKGRE LVDKLGDSKV VSPDMTAEWE RQLEEIYVKR LGEKGYQEFM
EGIRRFTREE VERLMKREFK VERRATPEML RLARAVSRDL GVKLEGTGME EVKRFLDENL
PKMRITCKCG GEVVGFSRGW KCRKCGTVVW REIAGKKITF RQAKSLFQGK ELKMKGFRSR
TGKRFSATVY LEDGKVKFKF E
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