| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0407 |
|---|
| Symbol | |
|---|
| ID | 5105524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 359062 |
|---|
| End bp | 360345 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640506313 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001190508 |
|---|
| Protein GI | 146303192 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATC AACCCTTGAG GAGCATATCC TCGTCCAAGA GGATAGTTAG GTTGTTGCCC
ATTCTTTTTT ACCTCTATCT AGTAAATTTT CTAGATAGAG TTAACATATC CTATGCAATT
TCAGCGGGGA TGTTCAAGGA TTTGGGAGTT CCCAAGAGTA GCGCGGATCT TATAGCCTCC
ATTGCCTCTA GTCTATTCTT CGTAGCTTAC GCTATCCCTC AGGTATTCTC CAACCTAGGC
ATAAGCAGAA TTGGAGTTAG GAAGGTATTT GCGTTAGCCT TCACCGCATG GGGGATAATC
ACAATTCTCA CAGGGTTTGT TCAGAACGTT CCTGAAGTCT ACCTGCTTAG GTTCCTCCTT
GGACTCGCTG AAGCTCCTTT CTACGCGGGC GTAATCTTTT ACCTCAGCGT GTGGTTCCTG
AGGGACGAAA GGGGATTCGC AAATAGCCTG TTCAATGCAG CCATCCCTGT CTCAGGGATA
ATAGGAGGAC TCATAGCTGG TTCATTCTTC TCTGTGTTTG GAGATGATCC CGGATGGAGA
TACCTATTCG TGGCTGAGGG TGTACTGGCT CTCGTGTCGG TGGCTGTTAT CTGGCTTTTA
CTCACCGACT TTCCCAAGGA TGCAAAGTGG TTAAGTGAGG GGGAGAAAGA GGAACTTCTA
AGCAAGATAA AGGTTGAAAA GGAGGAGAAG CAGAAGCTAG TTTCCCACGC CTCGTGGAGG
AGGGCGCTAG GTGATAGGGA TGTACTTCTC CTGGTGCTGA TATATTTCCT TGGCGTAACG
TCACTGTACG GTTACACCAT CTGGTTGCCG TCAATCATTA AGAGCTTCGG CGTCTCCGCC
TCAACTGCAA GTTACCTCAC TGTTATACCA TATCTCGTTG CCTCAATCTC GCTCATCTTC
ATCTCCAGGT ATTCAGACAG GGCCGGAGTT AGGAAATCTC TGGCCTTGGC AATATTTCTC
GTTGCAGGGA TTGGGCTATC CTTAAGTGCA TTTACACTCA AGACGCCAGT GATTTCGTTC
CTATTCTTCG TAATCTCTGC TATTGGAATT TACAGTTTCA TTCCAGTATT CTGGACTATA
CCCACTGAAT TCCTAAGCGA GGAGTCAGCT GCAGCGTCCA TAGGACTAAT AAACGCACTG
GGCAACTTGG GTGGGATCGC TGGTCCCATC ATAGTAGGCT TCCTAGAGAG CTTAACGGGG
GTTTTCACGG CAGGTGTTTA CTCCCTCGCC CTCTTCGACA TCCTAGCAGG GCTTGTGGTA
TTACTAGTCA GAAAGAGCAG ATGA
|
|---|
| Protein sequence | MSNQPLRSIS SSKRIVRLLP ILFYLYLVNF LDRVNISYAI SAGMFKDLGV PKSSADLIAS
IASSLFFVAY AIPQVFSNLG ISRIGVRKVF ALAFTAWGII TILTGFVQNV PEVYLLRFLL
GLAEAPFYAG VIFYLSVWFL RDERGFANSL FNAAIPVSGI IGGLIAGSFF SVFGDDPGWR
YLFVAEGVLA LVSVAVIWLL LTDFPKDAKW LSEGEKEELL SKIKVEKEEK QKLVSHASWR
RALGDRDVLL LVLIYFLGVT SLYGYTIWLP SIIKSFGVSA STASYLTVIP YLVASISLIF
ISRYSDRAGV RKSLALAIFL VAGIGLSLSA FTLKTPVISF LFFVISAIGI YSFIPVFWTI
PTEFLSEESA AASIGLINAL GNLGGIAGPI IVGFLESLTG VFTAGVYSLA LFDILAGLVV
LLVRKSR
|
|---|
| |