| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0233 |
|---|
| Symbol | |
|---|
| ID | 5104099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 193855 |
|---|
| End bp | 194712 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506138 |
|---|
| Product | protein of unknown function RIO1 |
|---|
| Protein accession | YP_001190334 |
|---|
| Protein GI | 146303018 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0478] RIO-like serine/threonine protein kinase fused to N-terminal HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0920719 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCTC TTACCTTAGC TGAAAGAGTA GCCGTCACAG ACAAGGTGGA TTACCTTATC
CTCAAGTACC TCATCGAGAA GAGGGAAAAG TTTGAGTACG TTCCACAGAG CGTTCTTAAG
GAGAACCTAT CCCTTACGGA GAGAGAGGCC CAGATAAGCT TATTGAGGCT CATCAAGAAC
GGCGCAGTCA CTAAGAAAAG AATTAGAGGA GAAGACTCCT TTTCCATCAC GTTCACAGGC
CTGGACATTG TGGCAACCAA GTCCCTCTAC TCCAAGAAAG TGATCAAGAG CCTTGGAATA
ACCATTGGTG AAGGGAAGGA AAGCAGGGTT ATGTTCGGAT ACGACCACGA AGATAACACT
CTAGCCATAA AGTATCACAG AATAGGGAGG AAGAGCTTCA AGAAAAGGAT CAGTAACTTC
CCCAGTAAGA ACTGGGTATC CATGACCTTG GAGAACGCTA AAAGGGAGTA TGAGGCCCTC
CAGTGCGTCA AGAACAACAT GGGTTACGTC CCAACTCCAA TAACCTTCAC GACAAACGCT
GTGGCCATGG AGTACTTCGA GGGAACTCCC CTATATAGAG CGGAACTAAG TGACCCTGAG
AAGGTACTAG ATGCGATCCT CGGAACCATG AGAATTGCCT ACGTTTACTG TAAGGGATTA
ACCCACGGCG ATCTAAGCCA GTTCAACGTT TTGGTGAGCA AGGATGAGGA CGTAAGGGTT
ATAGATTGGC CACAGGCTAC CAGGGATGAA GACGTCTTGA TAGGCGACGT CACTAGGATA
TTATCCTTCT TCGAAAAGGA GTATTCCCTT GAGAGAGACC TTGAGGAGGT TTTGGACTAC
GTAAAGGGAT ATTCATGA
|
|---|
| Protein sequence | MNSLTLAERV AVTDKVDYLI LKYLIEKREK FEYVPQSVLK ENLSLTEREA QISLLRLIKN
GAVTKKRIRG EDSFSITFTG LDIVATKSLY SKKVIKSLGI TIGEGKESRV MFGYDHEDNT
LAIKYHRIGR KSFKKRISNF PSKNWVSMTL ENAKREYEAL QCVKNNMGYV PTPITFTTNA
VAMEYFEGTP LYRAELSDPE KVLDAILGTM RIAYVYCKGL THGDLSQFNV LVSKDEDVRV
IDWPQATRDE DVLIGDVTRI LSFFEKEYSL ERDLEEVLDY VKGYS
|
|---|
| |