| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3109 |
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| Symbol | pilM |
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| ID | 4786622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 3308485 |
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| End bp | 3310650 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640091680 |
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| Product | fimbrial biogenesis protein |
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| Protein accession | YP_001022297 |
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| Protein GI | 124268293 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.157698 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAAT GGCGAGCACC AGCCATCGCG CTCGCGCTGT TCTTCTCCGC GGTGTCCGCG
TGGGCGGAGA ACGCGATTCA GGCGATCAAT AGCAGCCAGC AGGGCGCGGC CGACGTGGTG
CGCATCGAAC TGAGCGAAGC GTTGGGGGCC GTGCCGGCAG GGTTCGCTGT CCAGACGCCG
CCGCGCATCG CGATCGATCT TCCGGGGGTG AGCAACGCGC TGGGCCGTTC CAGCGTCGAC
GTCAACCAAG GCAACCTGCG ATCCGTCAAC GTCGCTCAGG CGGGCGATCG GACCCGTCTC
GTGCTGAACC TGAAGCAACC AGGCAATTAC TCGGCGACGC TCGACGGCAA GACTCTCGTG
CTGACGCTGC AGACCAGTGG CAATGTTGCG GCCGCGCCCA CGGCAGCCGC TCCCGTCGCC
GCCCCAGCGA CGGCGGCCCC GGTCCATTTT GCCGACAGCC TCAATGACGC GCCGCAGGTG
CTGCGCGCCG TCGATTTCCG CCGCGGCCAG GACGGTGCCG GTCGCGTGGT GGTCGATCTG
CCCAGCAACC AGGTGGGTGT CGACATTCGC CAGCAGGGCC AGAACCTGGT GGTTGAATTC
CTGAAGTCCA GCCTGCCGGA GAGCCTGCGT CGCCGTCTCG ACGTGACCGA CTTCGGCACC
CCGGTGCGGA CCGTGTCGTC CTTTCAGAGC GGCGACAAGG TCAGGATGGT GGTCGAGCCG
ACCGGTGTGT GGGAACACAG TGCCTACCAG ACCGACAACC AGTTCGTGCT CGAGGTGCGT
CCGCAGAAGA TCGATCCGAA CAAGCTGACG CAAGGTCCGG GCTATGCCGG CGAGAAGCTC
TCGTTGAATT TCCAGAGCAT CGAGGTTCGT GCGCTGCTGC AGGTGATCGC CGATTTCACC
AACTTCAACG TGGTGACCAG CGACACGGTG ACCGGCAATG TCACGCTGCG CTTGAAGGAT
GTTCCTTGGG ATCAGGCGCT CGACATCATC CTGCAGGCCA AGGGTCTGGG TGTGCGCAAG
AGCGGGAACG TCTTGTGGAT CGCGCCGAAG GATGAGATTG CCACGAAGGA GAAGCTCGAA
CTGGAATCCA AGGCGCAGAT TGCGTCTCTG GAGCCAGTCC GCACTCAGGC ATTCCAGCTG
AACTATGTGA AGGCCGAGGA AGTATCGAAG GGGCTCACGG GGCAGCAGGC CGGGCAAGGT
GGTAACGGTG GACAGGGCGG CGGATCGAAC AACAGTCGCA TCCTGTCGCC GCGCGGCAGC
ATCGTGTACG AGACGCGCAC CAACCAACTC TTCGTCAGCG ATATTCCCTC GAAGCTCGAA
GAGGTGGCGC AGATCATTGC CCGTATCGAC ATCCCGGTCC GTCAGGTACT GATCGAGGCA
CGCATCGTCG AGGCGACCGA TACCTTCGGC CGCTCGCTCG GAGCCAAGCT CGGTGCGACC
GTCGCACCGT CGTCGAAGGT GAACGCCGGC ATCGGCGGCA ATTACCTCGG TATCGGCGCC
GCCACCGGGC AGGCGCCTCC GATCAACAGC AGCGGGTTAA CCACAGGCAC ACCGTCGACG
AACAGCTACT TCGTCAATCT GCCCGCCGTC GGTCAGAACG GCTACGACGC GGCCACGTTC
GCGGTGTCGA TCTTCAATTC GGCGATGAAT CGCTTCCTGA ATCTCGAGAT CTCCGCGTTG
GAAGCGGACG GCAAGGGCAA GATCGTGTCC AGTCCGCGTG TGGTCACGGC CGATCAGGTC
AAGGCGCTCA TTGAGCAGGG CACGGAGATT CCGTACCAGA CGGCGACCTC CAGCGGCGCG
ACGGCGATCC AGTTCCGCAA GGCGACGCTG AAGCTCGAAG TGATCCCGCA GATCACCCCG
GAGGGCAACA TCATCCTCGA CGTCGACGTG AACAAGGACA GCCCCGGAGC CACCACGGCG
GCCGGCATCC TGATCAACAC CAAGCACGTC AAGACGCAGG TGCTGGTCGA CAATGGCGGG
ACGGTGGTGA TCGGTGGCAT CTATGAGCAG ACCGAGCAGA TCGACAACAC CAAGGTGCCG
CTGCTGGGCG ATGTGCCGGT GCTCGGTGCG CTGTTCCGCA GCCAGACCCG GACGTCGAAC
AAGACCGAAC TGCTGGTGTT CCTGACGCCC AAGGTCGTGA CCGACCGCAC TGCCGCTGCA
CGTTGA
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| Protein sequence | MNQWRAPAIA LALFFSAVSA WAENAIQAIN SSQQGAADVV RIELSEALGA VPAGFAVQTP
PRIAIDLPGV SNALGRSSVD VNQGNLRSVN VAQAGDRTRL VLNLKQPGNY SATLDGKTLV
LTLQTSGNVA AAPTAAAPVA APATAAPVHF ADSLNDAPQV LRAVDFRRGQ DGAGRVVVDL
PSNQVGVDIR QQGQNLVVEF LKSSLPESLR RRLDVTDFGT PVRTVSSFQS GDKVRMVVEP
TGVWEHSAYQ TDNQFVLEVR PQKIDPNKLT QGPGYAGEKL SLNFQSIEVR ALLQVIADFT
NFNVVTSDTV TGNVTLRLKD VPWDQALDII LQAKGLGVRK SGNVLWIAPK DEIATKEKLE
LESKAQIASL EPVRTQAFQL NYVKAEEVSK GLTGQQAGQG GNGGQGGGSN NSRILSPRGS
IVYETRTNQL FVSDIPSKLE EVAQIIARID IPVRQVLIEA RIVEATDTFG RSLGAKLGAT
VAPSSKVNAG IGGNYLGIGA ATGQAPPINS SGLTTGTPST NSYFVNLPAV GQNGYDAATF
AVSIFNSAMN RFLNLEISAL EADGKGKIVS SPRVVTADQV KALIEQGTEI PYQTATSSGA
TAIQFRKATL KLEVIPQITP EGNIILDVDV NKDSPGATTA AGILINTKHV KTQVLVDNGG
TVVIGGIYEQ TEQIDNTKVP LLGDVPVLGA LFRSQTRTSN KTELLVFLTP KVVTDRTAAA
R
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