| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A1878 |
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| Symbol | |
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| ID | 4786758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 2010994 |
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| End bp | 2012910 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640090448 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001021071 |
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| Protein GI | 124267067 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.097815 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTGA TCCGACAACT CTGGTTGCTG CTGCTCGCGA CCGTCATGGT CGGCGTGCTG
GGCAGCGCGC TGGTCACCGT GGGTTCGGCA CGCGGTTACC TCGAAACGCA GCTGCGCCTG
AAGAACAGCG ACAACGCCCA GGCGCTGGCA CTCACGCTGT CGCAGCAGAA CGGCGATCTC
GCGCTGGCCG AACTCGCCAT CAGCGCACAG TTCGACACCG GCTTCTATGA GCGCATCAGC
CTGAGGGGAC CGGAAGGGCA GATGCTCGTC GAACGCCTTG GCGCGGCCGA GCCGACAGAG
GTGCCGACCT GGTTCAGGGG GCTGGTGCCG ATCCAGTCGC TTCCCGGTGT CGCGCAGGTC
TCCGACGGCT GGCGGTCGCT GGGCACCCTC GAGGTGGTGA GCGCGTCGAG TTTTGCGCTC
GACGATCTTT GGCAGAGCAG CCTGCGGTCG GCCGGCTGGC TGGTCCTGAT CGGGCTGCTG
GCAGGTGCGC TCGGTTCGCT GGTGCTCCGG CGGATCCGCG CGCCGCTGCA GGCAACGGTC
GACCAGGCGC GCGCCATCGT CGAACGGCGT TTCGTTACCG TACCCGAACC ACGCGTCCCA
GAACTGCGCC AGCTCAGCCG GGCGATGAAC GCCATGGTGC AACGGTTGCA GGCCGTGTTC
GGGGAGCAAG GCGCACAGCT CGAGGCGCTG CGCCAGCAGG CGCAGACGGA TCCGCTCACC
GGGCTGTCCA ACCGCAGCCA CTTCCTTGCT CAACTGAGCT CAATGCTGGT GCGCGAAGAC
ACGCCACGCG CCGGCGTCTT GCTGCTGGCG CGAGTGCACG ACCTCGCGGG CCTCAACCGC
AATGCAGGCC ACGCGGCCAC CGACGCCCTG CTGCAGACTC TGGCCTTGAG CCTGCGGAGC
GCAACAGCGG GCGGCGCCGC CCCGATGACG GGACGCCTCA ACGGCGCCGA CTTCGCCGTG
CAAGCCGCCG ATGCCGACGC CGCCCACGTC GCCGCCGTTC TGCAGACCGC TGTGAAGACA
GCCTTGAAGC CCTGGACCGG GGTGCGCGTG GCCATCGGGG CCGTGTCGTG GCGGGCCGGA
GACAGCGTCG CTACGCTGAT GCAGGCTGCC GACGCGGCGC TGGTGCGGGC CGAGACGCAG
GACGGCTTCG GTTTGGCGGT CGACGGGCTG TCCGAAACGA ACGCCGAGAC CGCACTGGGC
GAAAGCGGCT GGAGGCTGTT GCTCCGGCAG GCGCTGGAGC GCGGCGACGC CCAGTTGGGC
AGCTTCCCGG TGATCGGCCG CGACGCGCGG CTGCTCCACC TGGAGAGCCC CTTGCGGCTG
CGCCTGCACG AGGGCGGGGC GTTCGAGCCT GCCGCACGCT GGTTGCCCTG GGTCCTGCGC
AGTCAGTTCA GTGCCAGCAC CGATCTCCTG GCGGTGCGTC TGGCACTGGA GCAGATCGCG
CTCGACGGAG TGCCACGCGG GGTGAATCTC GCGGCCGATT CCCTGGCAGA CAGCGGCTTC
CTCGCCAGCT TGCGCGGCCT GGTCTCGGCC CATGCACAGG CGGCTCGGGT GCTGTGGCTG
GAGGTGGGCG AACGCGCAGC CGTCGAGCAA TTGCCGGTGT TGCGGGACCT GGGGCAGCAA
CTGCGGCCAC TCGGTGTGCA ACTCGGACTC GAGCACGCCG GCGAGCGCCT GGCGCGCATC
GACCGGCTCT ACGAAGCCGG ACTCGACTAC GTGAAGCTCG ATGGCGCCTT GGCGAGCGGC
CTTGCGCAGG ACAGCACCCG TGCGGACTTC GTGCGGGGCC TGGCTTGGAC GCTGCATGGC
CTGGAGATCA GGGTGCTGGC CGAGGGCGTG GCGGACGCTG CCGACGCGCA GGCCTTGTGG
GCCTGCGGGC TCGACGGGAT CACCGGTCCC TGGGTCAGCA CGCAGCCACT GCGTTGA
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| Protein sequence | MSLIRQLWLL LLATVMVGVL GSALVTVGSA RGYLETQLRL KNSDNAQALA LTLSQQNGDL
ALAELAISAQ FDTGFYERIS LRGPEGQMLV ERLGAAEPTE VPTWFRGLVP IQSLPGVAQV
SDGWRSLGTL EVVSASSFAL DDLWQSSLRS AGWLVLIGLL AGALGSLVLR RIRAPLQATV
DQARAIVERR FVTVPEPRVP ELRQLSRAMN AMVQRLQAVF GEQGAQLEAL RQQAQTDPLT
GLSNRSHFLA QLSSMLVRED TPRAGVLLLA RVHDLAGLNR NAGHAATDAL LQTLALSLRS
ATAGGAAPMT GRLNGADFAV QAADADAAHV AAVLQTAVKT ALKPWTGVRV AIGAVSWRAG
DSVATLMQAA DAALVRAETQ DGFGLAVDGL SETNAETALG ESGWRLLLRQ ALERGDAQLG
SFPVIGRDAR LLHLESPLRL RLHEGGAFEP AARWLPWVLR SQFSASTDLL AVRLALEQIA
LDGVPRGVNL AADSLADSGF LASLRGLVSA HAQAARVLWL EVGERAAVEQ LPVLRDLGQQ
LRPLGVQLGL EHAGERLARI DRLYEAGLDY VKLDGALASG LAQDSTRADF VRGLAWTLHG
LEIRVLAEGV ADAADAQALW ACGLDGITGP WVSTQPLR
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