| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A0486 |
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| Symbol | |
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| ID | 4787071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | - |
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| Start bp | 527809 |
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| End bp | 528858 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640089044 |
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| Product | tRNA-dihydrouridine synthase B |
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| Protein accession | YP_001019683 |
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| Protein GI | 124265679 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.322673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.029488 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTCCCC TGCGCATCGG CTCGATCGAG CTCCCGAACC GGCTGTTCGT GGCACCGATG
GCGGGCGTCA CCGACCGACC GTTCCGCCAG CTGTGCAAGC GGCTCGGCGC CGGCTATGCG
GTGAGCGAGA TGGTCACCTC GCGCAAGGAA CTCTGGCACA GCCTGAAGAC CTCGCGGCGT
GCCAACCACG ACGGTGAGGT CGCGCCGATC GCGGTGCAGA TCGCCGGCAC CGAGCCGCTG
ATGATGGCCG AGGCCGCCGC CTACAACATC GACCGCGGCG CGCAGGTCAT CGACATCAAC
ATGGGCTGCC CGGCCAAGAA GGTCTGCAAC GTGTGGGCCG GCTCGGCGCT GATGCGCGAC
GAGTCGCTCG CGCTGCGCAT CGTCGAGGCG GTGGTCACCG CCTGCGCGCC GCACGGCGTG
CCGGTGACGC TGAAGATGCG CACCGGCTGG AACATGCAGA ACCGCAATGC GGTGGCGCTG
GCGCGCGGCG CCGAGTCGCT CGGCATCGCG ATGCTGACGG TGCACGGCCG CACGCGCGAG
CAGGGCTACG CCGGCTCGGC CGAACACGAC ACCGTGCGCG CGGTGAAGAC CGCGGTGCAG
GTGCCGGTGG TCGCCAACGG CGACATCGAC TCGCCCGAGA AGGCGCGCGA CGTGCTCGCC
GCAACCGGCG CCGACGCGGT GATGGTCGGC CGCGCTGCGC AGGGGCGGCC GTGGATCTTC
CGCGAGATCG CGCACTTCCT CGCCACCGGC GAGCGCCTGC CGCCGCCGCG TACCGCGCAG
GCCAAGGCCT GGTTGATCGA ACACCTGCAC GACCACTACG GCCTGTACGG CGAATACGCC
GGCGTGCGCA CCGCGCGCAA GCACATCGGC TGGGCAGTGC ACGCGTTGCC GGGCGGTGCC
CTGTTCCGCG CCCGAATGAA CACACTGGAG CGCTGCGAGG CGCAAGTCGC CGCTGTCGGC
GATTTCTTCG ATGCCCTCGG GGTCGAGCAT GAGCTGCTGC CGCAAGCAGC AGCGGCGCTC
GAACCGTCCT TCGAACAAGA GGCTGCATGA
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| Protein sequence | MSPLRIGSIE LPNRLFVAPM AGVTDRPFRQ LCKRLGAGYA VSEMVTSRKE LWHSLKTSRR
ANHDGEVAPI AVQIAGTEPL MMAEAAAYNI DRGAQVIDIN MGCPAKKVCN VWAGSALMRD
ESLALRIVEA VVTACAPHGV PVTLKMRTGW NMQNRNAVAL ARGAESLGIA MLTVHGRTRE
QGYAGSAEHD TVRAVKTAVQ VPVVANGDID SPEKARDVLA ATGADAVMVG RAAQGRPWIF
REIAHFLATG ERLPPPRTAQ AKAWLIEHLH DHYGLYGEYA GVRTARKHIG WAVHALPGGA
LFRARMNTLE RCEAQVAAVG DFFDALGVEH ELLPQAAAAL EPSFEQEAA
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