| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1101 |
|---|
| Symbol | |
|---|
| ID | 7271018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1138917 |
|---|
| End bp | 1139480 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643569737 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_002466170 |
|---|
| Protein GI | 219851738 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0262] Dihydrofolate reductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.448465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAAAG TTATTCTCGG CATGACCATA TCCCTCGACG GTTTCGTGAA TGACCGTGAC
GGAAGGGTGG ACCGACTGTA TCCCGATCTC GCGGAGCTGG GAAAGACGAA GATGCTCAGG
GACGCGATCA GGACGACCGG TGCAGTCGTC ATGGGCAGGA ACGCGTACGC GATGGGAGAC
CCGGATACGT TTGCGGACAC CTACGAATTC CAGACCCCGA TCTTTGTTCT CACCCACGTT
CCTCCAAAAA AGATGCCAAA GGAGAACGAT AACCTGAAGG TCATATTTGT CACAGACGGG
ATCAGGAGTG CGATGACCAG AGCGAAAGCT GCCGCTGGCA CGAGGAACGC GACGGTGATA
GGGGGTGCCA GCACCTTCCA GCAGTGCCTG CGGGAGAGAC TTTGCGATGA GGTGCAGATC
GGGATCATGC CGGTCCTGTT TGGCAGGGGG CTCCGGTTGT TTGAACATTT GGAGGACGAA
GATATCCGGC TTGAGAAGGT CCGGATGGAG GAATCACCCG GTGGCAGGAC CGACATCTGG
TTCCGGATTG CACCATCCTC ATAG
|
|---|
| Protein sequence | MGKVILGMTI SLDGFVNDRD GRVDRLYPDL AELGKTKMLR DAIRTTGAVV MGRNAYAMGD
PDTFADTYEF QTPIFVLTHV PPKKMPKEND NLKVIFVTDG IRSAMTRAKA AAGTRNATVI
GGASTFQQCL RERLCDEVQI GIMPVLFGRG LRLFEHLEDE DIRLEKVRME ESPGGRTDIW
FRIAPSS
|
|---|
| |