| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1048 |
|---|
| Symbol | |
|---|
| ID | 7271782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1075931 |
|---|
| End bp | 1077928 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643569684 |
|---|
| Product | DNA gyrase, B subunit |
|---|
| Protein accession | YP_002466118 |
|---|
| Protein GI | 219851686 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.903378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.436385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAT CCTACGATGC ATCTCATATT ACTGTACTGG AAGGGTTGCA GCCAGTCCGC
GAGCGCCCTG CGATGTACAT CGGCAGTACC GATACCCGGG GGCTTCACCA TCTGGTCTAT
GAAGTGGTCG ACAATGCGGT CGATGAGGCG CTTGCAGGTT TCTGCGACCT GATCAGCATC
ACGATCAACC GGGACGGTTC CTGTACGGTG GATGACAACG GCAGGGGAAT CCCCGTCGAT
AAGATGCAAA AGAACGGGAA GAGCGCCCTT GAGACGGTTC TGACGATCCT CCATGCTGGC
GGCAAGTTCG ACAAGAACAC CTACCAGGTT TCTGGAGGGC TGCACGGCGT CGGTGTCTCG
GTCGTGAACG CCCTCTCGGT CTCTCTCGTC GCCGATGTCT TCCGCGACGG AAATCGATAC
CGGATGGAGT TCGCACAGGG GAAGGTGGTC TCCCCGCTAA GTGTCCATAA AGAGACGCTC
TCTGAACTGC TTGAGCGGTA CCGGCGGCGG TACAGGAGCG AACCCCCACG GGAGGTGGAG
ACAAAAGAAG CGCTCTTTGC GGACGAAGGG GCAAAACTGA GCGGAACGAT CATCACCTTC
CAACCGGACG ATTCGATCTT CGAGACGGTC ACCTTCGACT ATGATGTCCT GGTCCACCGC
CTCCGAGAGA TGGCATTCCT GAACCGTGGG ATCACCATCA GAATCACCGA CCTCCGGTCC
GGCGACAAGG ACGAGTTCCA CTACGATGGT GGCCTCCGCG AGTTTGTTCA GTACCTGATA
GATGGCCGGG AGGTGCTCCA TCCTGATGTG ATCGACCTCT CTCGAAAAGA CGAGGAGAAC
AAGCTCGAGG TCGAGGTGGC TCTCCAGTAC ACCCAGAGTT ATACCGAGAC GGTCTACACG
TTTGTGAACA GTGTTAACAC TCGTGAGGGA GGGACCCATC TAGAAGGGTT CCGGAGTGCG
ATCACGAGGG CCATCAACAA CTCGGCACGG AAGGCCAACC TGATCAAGAA CAACACCCTG
ACCCTCCGGG GCGAGGATGT CCGTGAGGGG TTGACCGCCG TCATCAGCAT CAAGCTGGCA
AACCCACAGT TCGAAGGGCA GACCAAGATG CGGCTTGGCA ACTCCAATGT GCGGGGGATT
GTCGATTCGC TGGTCTATCA GTCGCTCTCT GAGTATTTTG AGGAGAATCC AAAATCCATC
GCAGCAATCT TTGAAAAGGC AACCGTGGCT GCACAGGCCC GTGAGGCGGC TCGGAACGCC
CGTGAACTGG CCAGAAGAAA GAGCACCCTG GAGTCATCAG GGCTGCCTGG AAAGTTGGCA
GACTGTTCGG AGCGGGATCC GGCCAAGAGC GAGGTCTATA TCGTCGAAGG GGACTCTGCA
GGGGGCTCTG CTAAGCAGGG CCGGAATCGG CGGTTCCAGG CCATCCTCCC CCTGAGGGGG
AAGATTCTGA ATGTCGAGAA GGCCACCCAG CATAAGATGA TCAAGAGCGT GGAGATCCAG
GTGCTGATCT CGGCTATCGG GGCCGGCATC GGGGACAGGA TGGACGCAAA CCGGGCCCGG
TATCATCACA TCGTGCTGAT GACCGATGCC GATGTGGACG GGGCTCATAT CCAGACCCTG
CTGCTGACCT TCTTCTACCG GTACATGCCC GAACTGATCG AACGCGGGTA CGTTTACATC
GCCCAGCCTC CGCTCTTTCG GATTGCAAAG GGAAAACAGG TGCGGTATGT CTACCGTGAA
GAGGAGATGC AACAGATCTC TGCAGAGTTC GGGGACAAGG GTGTGACCGT CCAGCGGTAC
AAGGGCCTTG GTGAGATGAA CGCCGATCAA CTCTGGGAGA CGACGATGAA TCCTGATACC
AGGGTCTTAA AACAGATCCG GATCGAGGAT GCCGGCTATG CCAACGAGAT CTTTGAGAAA
CTGATGGGAG AGGATGTGAG CGCCCGGAAA AATTTCATTC TGCGGCATGC CAAGGAGGTG
ACCAACCTTG ACATCTGA
|
|---|
| Protein sequence | MTESYDASHI TVLEGLQPVR ERPAMYIGST DTRGLHHLVY EVVDNAVDEA LAGFCDLISI
TINRDGSCTV DDNGRGIPVD KMQKNGKSAL ETVLTILHAG GKFDKNTYQV SGGLHGVGVS
VVNALSVSLV ADVFRDGNRY RMEFAQGKVV SPLSVHKETL SELLERYRRR YRSEPPREVE
TKEALFADEG AKLSGTIITF QPDDSIFETV TFDYDVLVHR LREMAFLNRG ITIRITDLRS
GDKDEFHYDG GLREFVQYLI DGREVLHPDV IDLSRKDEEN KLEVEVALQY TQSYTETVYT
FVNSVNTREG GTHLEGFRSA ITRAINNSAR KANLIKNNTL TLRGEDVREG LTAVISIKLA
NPQFEGQTKM RLGNSNVRGI VDSLVYQSLS EYFEENPKSI AAIFEKATVA AQAREAARNA
RELARRKSTL ESSGLPGKLA DCSERDPAKS EVYIVEGDSA GGSAKQGRNR RFQAILPLRG
KILNVEKATQ HKMIKSVEIQ VLISAIGAGI GDRMDANRAR YHHIVLMTDA DVDGAHIQTL
LLTFFYRYMP ELIERGYVYI AQPPLFRIAK GKQVRYVYRE EEMQQISAEF GDKGVTVQRY
KGLGEMNADQ LWETTMNPDT RVLKQIRIED AGYANEIFEK LMGEDVSARK NFILRHAKEV
TNLDI
|
|---|
| |