| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mnod_7520 |
|---|
| Symbol | |
|---|
| ID | 7303565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium nodulans ORS 2060 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011894 |
|---|
| Strand | - |
|---|
| Start bp | 7610637 |
|---|
| End bp | 7612634 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643605075 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_002502560 |
|---|
| Protein GI | 220927258 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA AGGCAACGGA ACGAGAAGAG ACCGAAGCGG CCCCCGAGCA GCAGACCGAC
GGACCGCTCC TCGACCTGAC GGATGCCTCC GTCAAGCGGA TGATCAAGCT CGCCAAGAAG
CGCGGCTACG TCACCTACGA CGAGCTGAAC GAGGTGCTGC CGCAGGAGGA ATTCACCTCC
GAGCAGATCG AGGACGTGCT GGGCCAGCTC TCCGAACTCG GGGTGAACGT GGTCGAGGCC
GAGGAGGCCG ACGACAACCA GGCCGAGGGT GCCGGCGAGG GCGGTGCCGA GGACGAGGAG
GTGAGCGAGG GGACCGAGGT CGCCGAGGTC GCCCAGAACC GGCCGGCCGT CCTGCGCACC
GAGACCACCA AGGAGCCCAC CGACCGCACG GACGACCCCG TGCGCATGTA TCTGCGCGAG
ATGGGCTCGG TGGAGCTCCT CTCCCGCGAG GGCGAGATCG CCATCGCCAA GCGCATCGAG
GCCGGGCGCG AGGCGATGAT CGCGGGGCTC TGCGAGAGCC CGCTGACCTT CCAGGCCATC
ATCATCTGGC GCGACGAGCT CGTCGACGGC CGGGTGCTGC TGCGCGACAT CATCGACCTC
GAGGCGACCT ATGCAGGGCC GGACGGCCGC GGCGGGCCGG CCGAGGGCGA GGAGGAGGGC
GAGGGCGAGG CGCCCGAGGG CGAGGTGCCG CCGCCGGAGG GCGAGGGGGA CGAGGACGAC
CTCGAGAACA ACGTCTCGCT TTCGGCCATG GAGGCCGAAC TGAAGCCGCG GGTGCTCGAG
ACCTTCGACG CCATCGCCGA GAACTACCGC AAGCTGCGCA ACGTCCAGGC CGAGCAGGCC
GAGACCCGCC TGCAGGGCGG CGGCGCCAGC GAAGCCCAGG GCCGGCAATA TTCCGAGCTC
AAGAGCCGGA TCGTCGCCGA CGTGAAGTCG CTCTCGCTCA ACGCCAACCG CATCGAGGCG
CTGGTCGAGC AGCTCTACGA CATCAACAAG CGGCTGATCT CGCAGGAGGG CCGCCTGATG
CGGCTCGCCG AGAGCCACGG CGTGGCCCGC GACGAGTTCC TGCGCCACTA CCAGGGCTAC
GAGCTCGATC CGCACTGGGT CGAGCGCGTG GGCAAGCTCG GCGGCAAGGG CTGGAAGAAC
TTCGTCGAGC GCGGGGCCGA CGGGATCCAG AGCTTACGCG AGCAGATCAT GTCCCTCGCC
TCCGAGACCG GCCTGGAGAT CCAGGAGTAT CGGAAGATCG TCCACATGGT CCAGAAGGGC
GAGCGTGAAG CCCGGCAGGC CAAGAAGGAG ATGATCGAGG CGAACCTGCG GCTCGTGATC
TCGATCGCCA AGAAATACAC GAATCGCGGC CTGCAATTCC TGGACCTGAT CCAGGAGGGC
AATATCGGCC TGATGAAGGC AGTGGACAAG TTCGAGTACC GGCGCGGCTA CAAGTTCTCG
ACCTACGCCA CGTGGTGGAT CCGGCAGGCG ATCACCCGCT CGATCGCCGA CCAGGCCCGC
ACGATTCGCA TCCCGGTGCA CATGATCGAG ACGATCAACA AGATCGTCCG GACCTCGCGC
CAGATGCTGC ACGAGATCGG CCGCGAGCCG ACGCCGGAGG AGCTGGCCGA GAAGCTGGCC
ATGCCGCTGG AGAAGGTGCG CAAGGTCCTC AAGATCGCCA AGGAGCCGAT CTCCCTCGAG
ACGCCGATTG GTGACGAGGA GGATTCGCAT CTCGGCGATT TCATCGAGGA CAAGAACGTC
GTCCTGCCGA TCGATGCGGC GATCCAGTCG AACCTGCGCG AGACGACGAC GCGGGTGCTG
GCCTCGCTCA CGCCCCGCGA GGAGCGCGTG CTGCGCATGC GCTTCGGCAT CGGCATGAAC
ACCGACCACA CCCTGGAGGA GGTCGGCCAG CAATTCTCGG TGACCCGCGA GCGCATCCGC
CAGATCGAGG CGAAGGCGCT GCGCAAGCTC AAGCACCCGA GCCGGTCGCG CAAGCTGCGC
AGCTTCCTCG ACAACTGA
|
|---|
| Protein sequence | MATKATEREE TEAAPEQQTD GPLLDLTDAS VKRMIKLAKK RGYVTYDELN EVLPQEEFTS
EQIEDVLGQL SELGVNVVEA EEADDNQAEG AGEGGAEDEE VSEGTEVAEV AQNRPAVLRT
ETTKEPTDRT DDPVRMYLRE MGSVELLSRE GEIAIAKRIE AGREAMIAGL CESPLTFQAI
IIWRDELVDG RVLLRDIIDL EATYAGPDGR GGPAEGEEEG EGEAPEGEVP PPEGEGDEDD
LENNVSLSAM EAELKPRVLE TFDAIAENYR KLRNVQAEQA ETRLQGGGAS EAQGRQYSEL
KSRIVADVKS LSLNANRIEA LVEQLYDINK RLISQEGRLM RLAESHGVAR DEFLRHYQGY
ELDPHWVERV GKLGGKGWKN FVERGADGIQ SLREQIMSLA SETGLEIQEY RKIVHMVQKG
EREARQAKKE MIEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYRRGYKFS
TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKIVRTSR QMLHEIGREP TPEELAEKLA
MPLEKVRKVL KIAKEPISLE TPIGDEEDSH LGDFIEDKNV VLPIDAAIQS NLRETTTRVL
ASLTPREERV LRMRFGIGMN TDHTLEEVGQ QFSVTRERIR QIEAKALRKL KHPSRSRKLR
SFLDN
|
|---|
| |