| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_4118 |
|---|
| Symbol | |
|---|
| ID | 5364991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | - |
|---|
| Start bp | 4659102 |
|---|
| End bp | 4660283 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640806511 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_001342949 |
|---|
| Protein GI | 152998114 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000089242 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGC GGTTATATTA TGGGCTCTTG GTATTTTTCT TTCTTGGGGC TAGCCGTGTG
TTGGCGATGG ATGTCTATTT TGAATCTCGT TCGCTACAAG AGGTATTGCC TTGGCTTGCG
TCACAAATGA ATGAAAGCGT GGTGATTAGC CCAGAAATCG ATGATGTATT AACACTTTCT
ATTAAAGATG CAAGCTGGAA AGATGTGATG GAGGCTATTG CACAGCTGCC ACATATCCAG
CTTGAATGGC AAGGGCATGT AGCGGTGCTG ATGCCCGTGA AAACACCTTT AGCAGACAGT
ACCGAACCTA CATCTGTTAT GTGTCAGAGA GCTTATTGGG TGTTGAAACA TGCTAAAGCA
AAAGATGTGG GTGTACATTT AAGAGCCTTG CACCCATCCA TTTCTTTAGT TGTGGATGAT
CGAACCAATT CGATTATTGC TCATTCTTGT ACTTCTTTCG AAGGTATTCA GGAAACACTT
GATTGGTTAG ATACACCGTT AAAACAAATT GAAATCAGTG CGCAAATTGC CCAAGTAAGT
CGAACCGCTC AATCGCAGTT TGGGGTGAAC TGGCAAGCTA AGTTATCTGA TGGTGTTCGA
TCCTCTATCG GAGGAGCTGT TGATTTAGGC GCGTTGACGC CAACGACGAG TTTGGACTTT
TCCAGTATCG GTGGTTCTGG CTTATTGGCA CTCACTTTGG ACATGATGGA AAGTGAAGGT
TTAGCTAATG TGGTGTCAAA GCCTAAAATT GTCACTTCCG AAGGGCTGCC TGCTCGAATT
GAATCTGGAA CCGAAGTACC TTATCAAACG GTTAGTGATG ATAAGGTGAG TATTGAGTTT
CGCCAAGCAG TACTCATGTT GGAGGTGACC CCGTTTGTAA AAGACAGTGG GCACATTTTG
CTATCGTTAA CGATCCATCA AGATTCTGTG GGAGATTTAG TTAATGGTGT GCCTAGTTTA
AAAACTAATC GTTTAAAAAC ACAGGTCGTG GTGAAAAACC AAGAAACGCT TGTTTTAGGT
GGGGTTTTTC GAGAAGAGCG CTTCGAGTCC GAGAGTCGGG TTCCTTTCTT TAGTGACATT
CCTTGGTTGG GCGAGTTGTT TAAAAGACAA TCAGAACAGC AAGAAAAGGT TGAATTGCTT
GTATTTATTA CACCAAAGCT GCTACAAATG TCAGTCAACT AG
|
|---|
| Protein sequence | MTKRLYYGLL VFFFLGASRV LAMDVYFESR SLQEVLPWLA SQMNESVVIS PEIDDVLTLS
IKDASWKDVM EAIAQLPHIQ LEWQGHVAVL MPVKTPLADS TEPTSVMCQR AYWVLKHAKA
KDVGVHLRAL HPSISLVVDD RTNSIIAHSC TSFEGIQETL DWLDTPLKQI EISAQIAQVS
RTAQSQFGVN WQAKLSDGVR SSIGGAVDLG ALTPTTSLDF SSIGGSGLLA LTLDMMESEG
LANVVSKPKI VTSEGLPARI ESGTEVPYQT VSDDKVSIEF RQAVLMLEVT PFVKDSGHIL
LSLTIHQDSV GDLVNGVPSL KTNRLKTQVV VKNQETLVLG GVFREERFES ESRVPFFSDI
PWLGELFKRQ SEQQEKVELL VFITPKLLQM SVN
|
|---|
| |