| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmwyl1_3625 |
|---|
| Symbol | |
|---|
| ID | 5365411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinomonas sp. MWYL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009654 |
|---|
| Strand | + |
|---|
| Start bp | 4096179 |
|---|
| End bp | 4097186 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640806004 |
|---|
| Product | dihydrouridine synthase DuS |
|---|
| Protein accession | YP_001342462 |
|---|
| Protein GI | 152997627 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000203836 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000000672077 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGAACAATT CCCTAAAAGC GACCCTCACC TTGAAGAACC CAACCAATAA CAGCATTGTA
CTGGCCGTTG CACCTATGGA AGGTGTCATG GATCACACAA TGAGAGCGTT ACTATCACAA
ACTGGCGGCA TGGACTATTT GGTCTCAGAG TTCATCCGAG TCACTCAATA CCCAATCCCC
GCAGCCACAT TCAAACACCT CGTTCCTGAA AACACTAATA AAGCACGAAC AACACACAAC
CACCCAGTTC ACACTCAATT ACTCGGCAGC AACGCAGAAC TTATGGCAGA AAGCGCTCTG
AATGCCACTA AAGCTGGCGC AAAACATATT GATGTAAATT TCGGCTGCCC AGCAAAACGC
GTAAATGGTC ACGGCGGTGG CTCTGTTTTA TTACAAACCC CTGATGCACT TTATGACATC
ATGAGCGCAA TTCGAGACAC ACTACCAAGC GACATTCCTG TATCAGCAAA AATCCGCTTA
GGTTTCGAAG ATGAAGCACT ACTCTTTGAT AACGTTGCCG CCATTGAGGC AGCCGGTGTT
GGTACACTCA CAATACATGG ACGCACAAAG AAAGATGGCT ATAAGCCACC TGCAAGATGG
GAAAAAATAG GCGAAATTCA AGCCAAAACA AAAATGACAG TAGTTGCTAA TGGAGACATT
ACAGATACAA AATCTTTATT GCGCTGCCAA TCAATCACAG GTTGTCAACA TTTTATGATT
GGACGAGGAT CACTCAACAA TCCATTTGTT TTCCAACAAA TAAGAAAAGA ACTTAATGGA
CAAGAAAGCA CAGCTGACAC AACAAACCTA AACAGGCTAT TCATTAGCTA CAGCAGAGAA
CTACAAGAAC ATTATGACGA AGTTGCCGCA CTAGGCAGGC TAAAACAATG GTGCGGGCAC
TTAAGATTCG AATTCAAAGA AATAAAAGAA AACCTTCAAA CATTACGACG TTGCAAAAGC
GTGAATGAAT TAATAAGCAC ATTCAATGAT GCAATGAGAA AAACATAA
|
|---|
| Protein sequence | MNNSLKATLT LKNPTNNSIV LAVAPMEGVM DHTMRALLSQ TGGMDYLVSE FIRVTQYPIP
AATFKHLVPE NTNKARTTHN HPVHTQLLGS NAELMAESAL NATKAGAKHI DVNFGCPAKR
VNGHGGGSVL LQTPDALYDI MSAIRDTLPS DIPVSAKIRL GFEDEALLFD NVAAIEAAGV
GTLTIHGRTK KDGYKPPARW EKIGEIQAKT KMTVVANGDI TDTKSLLRCQ SITGCQHFMI
GRGSLNNPFV FQQIRKELNG QESTADTTNL NRLFISYSRE LQEHYDEVAA LGRLKQWCGH
LRFEFKEIKE NLQTLRRCKS VNELISTFND AMRKT
|
|---|
| |