| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_4512 |
|---|
| Symbol | |
|---|
| ID | 4113341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | + |
|---|
| Start bp | 4789104 |
|---|
| End bp | 4790216 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638033662 |
|---|
| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
|---|
| Protein accession | YP_641672 |
|---|
| Protein GI | 108801475 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCGAGCC CCGTGGTGCT GGCCCCGATG GCCGGGGTGA CCAACGTCGC CTTCCGCACC
CTGTGCCGTG AGCTCGAGGT GGCCAGGGCC GGCACCGTCA GCGGCCTGTA CGTGTGCGAG
ATGGTGACCG CCCGGGCGCT GGTCGAACGC CACCCGGTCA CCATGCACAT GACCGCGTTC
GCATCCGACG AGTCACCCCG ATCGCTGCAG CTCTACACCG TCGACCCGGC CACCACCTAT
GCGGCGGCGA AGATGATCGC CGACGAGAAC ATGGCCGACC ACATCGACAT GAACTTCGGC
TGCCCGGTGC CCAAGGTGAC CAAGCGCGGC GGCGGCGCCG CGTTGCCCTA CAAGCGGAAA
CTGTTCGGGC AGATTGTGCG CGCCGCAGTC ACCGCCACAG AGGGCACGGA CATCCCCGTC
ACGGTGAAGT TCCGGATCGG TATCGACGAC GCCCACCACA CCCATTTGGA CGCCGGCCGC
ATCGCCGCCG AGGAGGGTGC GGCCGCGGTC GCCCTGCACG CCCGCACGGC GGCGCAGCGC
TACTCCGGCA CCGCCGACTG GGACCAGATC GCCGCGCTCA AGGCGCACGT GACGGCCGTC
CCGGTCCTGG GCAACGGCGA CATCTTCGAC GCCGACGACG CGCTGGCGAT GATGGCGGCC
ACCGGGTGCG ACGGTGTCGT GATCGGGCGC GGCTGCCTCG GACGGCCGTG GCTGTTCGCC
GAACTGTCGG CCAAGTTCAC CGGCCGCCCC CTGCCGGTAC CGCCCACACT CGGCGAGGTG
GCCGACATCA TCCGCAGGCA CGGCGAACTG CTCACCGACC ACTTCGGCGA GGACAAGGCC
ATGCGCGACA TCCGCAAACA CATCGCGTGG TACCTGCACG GATTCCCCGC CGGATCGGAT
CTGCGCCGGG CGCTCGCGCT GGTCAAGACG CGCGCAGAAC TCTCCGAACT GCTCGCCCGG
CTCGACCCCG ACGTGCCGTT CCCACCGGCG GCGACCGGCC CGCGCGGACG GCAGGGGTCC
GCCGCTTCGG TGTCCCTGCC GGAGGGCTGG CTGACCGATC CGGACGACTG CACGGTGCCG
GCGGGTGCAG ACGTCATGCA CTCCGGAGGC TGA
|
|---|
| Protein sequence | MPSPVVLAPM AGVTNVAFRT LCRELEVARA GTVSGLYVCE MVTARALVER HPVTMHMTAF
ASDESPRSLQ LYTVDPATTY AAAKMIADEN MADHIDMNFG CPVPKVTKRG GGAALPYKRK
LFGQIVRAAV TATEGTDIPV TVKFRIGIDD AHHTHLDAGR IAAEEGAAAV ALHARTAAQR
YSGTADWDQI AALKAHVTAV PVLGNGDIFD ADDALAMMAA TGCDGVVIGR GCLGRPWLFA
ELSAKFTGRP LPVPPTLGEV ADIIRRHGEL LTDHFGEDKA MRDIRKHIAW YLHGFPAGSD
LRRALALVKT RAELSELLAR LDPDVPFPPA ATGPRGRQGS AASVSLPEGW LTDPDDCTVP
AGADVMHSGG
|
|---|
| |