| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2864 |
|---|
| Symbol | |
|---|
| ID | 4480812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 3566990 |
|---|
| End bp | 3568015 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639723609 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_866763 |
|---|
| Protein GI | 117926146 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0591459 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGCA CATTAACAGA ACTCATCCAC ATCATCACGG GATTGTTCAG GTCTAGTGCA
GCCCTACAAC TGGAGATTCT GGCTCTTCGC CACCAAATCA ATATTCTTCA ACGACAAAAA
CCAAAGCGGC CAACGTTTTC ACGTCGGGAT AAGTTGTTCT GGGTCTGGCT TTCTCGGCGG
TGGTCGGGTT GGAAGAGTGC CCTCGTGATC ATTAAGCCAG CAACCGTGGT CAAGTGGCAC
AAACAGGGCT TTAAGCTCTA CTGGAAATGG AAATCGCAAC CTAAACGCCC TGGTCGTCCT
CGTATTCCGA AGGAGGTGCG TGATCTGATC CGTAAGATGA GTCGGGAGAA TCCACTTTGG
GGTGCACCAC GCATACATGG TGAGTTACTG AAATTGGGCT ACGATATAGG AGAGACATCA
GTCTCAAAGT ACATGCTCAA ACCTGACAAG CCCCCTTCAC AGACCTGGAG GACCTTCCTT
GATAACCACG TAAATCAGAT CGTGGCCATG GACTTCTTCA CCATACCGAC AATCTTTTTC
AAGGTGCTGC ACGTCCTCAT TCTGATCGAC CACGATCGCC GCCGGATTAT CCATTTCAAT
GTTACAACCA ATCCAACGTC AGCTTGGGTG GTTCAACAAA TCTGCGAAGC GTTTCCCTGG
GATTCAGCCC CGCGTTTCCT GCTGCATGAT CGCGATCCAC TCTTCATGGC CAGTCAGCAC
TCACTCAAAG CCATGGGGAT CGAAACGCTG ATCACAGCCC CAGGATCGCC TTGGCAAAAT
GCCATCGCAG AACGGATGAT CGGTAGTTGT CGTAGAGAGT GCTTTGACCA CATCATCGTG
CTCAACGAAG AACACCTGCG ACAGCGGCTT GGGGAGTATG TGGATTATTA CCACCAGCGG
ACCCATTTGG GTTTGGCCAA AGATTCCCCG GTTCACCGTC CGATTCAGCA CAAAGAGTCA
GGCGACGTTA TCGTATTCCC TGTTCTCGGC GGTCTGCACC ACCGATACGA ACGCATCGCT
GCCTGA
|
|---|
| Protein sequence | MLSTLTELIH IITGLFRSSA ALQLEILALR HQINILQRQK PKRPTFSRRD KLFWVWLSRR
WSGWKSALVI IKPATVVKWH KQGFKLYWKW KSQPKRPGRP RIPKEVRDLI RKMSRENPLW
GAPRIHGELL KLGYDIGETS VSKYMLKPDK PPSQTWRTFL DNHVNQIVAM DFFTIPTIFF
KVLHVLILID HDRRRIIHFN VTTNPTSAWV VQQICEAFPW DSAPRFLLHD RDPLFMASQH
SLKAMGIETL ITAPGSPWQN AIAERMIGSC RRECFDHIIV LNEEHLRQRL GEYVDYYHQR
THLGLAKDSP VHRPIQHKES GDVIVFPVLG GLHHRYERIA A
|
|---|
| |