Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_2709 |
Symbol | |
ID | 4483063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 3423836 |
End bp | 3425032 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639723454 |
Product | sigma-54 factor interaction domain-containing protein |
Protein accession | YP_866608 |
Protein GI | 117925991 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0391766 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCAGCA AACCGCACCA GATCATCGGC AACAGCACCG CTCTGAAAGC GACCTTGGCC AAAGCCAAGA AGGTCGCCAA GACGGTGCTG CCCGTGCTGA TCACCGGTGA GAGTGGTACC GGCAAGGAGC TGTTTGCCCA ATTCATCCAT GACCAGAGCC GCAGAGCTCA GAAACCGTTC GTCGCCGTCA ATTGCGCCGC CATACCTGCG GAATTGCTGG AAGCGGAGCT GTTTGGGTAC AAGAAAGGCG CGTTCAGTGG GGCAACCAGC GACAAAGACG GCCTGTTTGT CCAGGCCAGC ACCGGAACCC TGTTTCTGGA TGAAATCGGG GATATGCCAC TGCCACTCCA GGCAAAGATC CTTCGGGTGT TGCAGGAAGG AGAAGTCCGG CCCGTCGGAG CCAAGGCCGT ACAGAAGTTG GATGTTCGGA TCCTCTCCGC CACCCACCGT GACCTGACCC AAATGGCGGC GGACAGGAAA TTCCGCGAGG ATCTGATCTT CCGTCTCAAG GGATATGCGA TCCAACTCCC CGCCCTCGGA GAGCGTGGGC ATGACATCGT CAAGCTGGCC CGGGCATTCC TAAAATCCCG AGAGGATTTC GCCGGGATCG GCTTGAGCCG TGATGCCCAA ACGCTCCTGA TGGCCTATCA TTGGCCGGGC AATGTGCGGG AGCTGCAGAA CATCATCCTG GCCGCAGCGG TGGATGCCCG TAGGAATATT TTCGCTGAGC ACCTGGCTGA ACACCTGCCG GATGCCATCG ACGTCGAAGA TCCAAGCATG TCAGTGAGGG AGCGGATCAT TTCAGCGCTC CAGGAATCGG GCAGTTTGGC TTTGGTCGAC CTGCAGAGCA GGCTGAAGAC TCCCAAACCC ACGATTCACC GACACCTGAC CAGCATGGTG GCTGAGGGAG ATGTGTCGCG GTCTGTCGTC TCTGGCCAGA CGCTCTTTGC CTTGGCAGAA CCCAATGTTG AAGGCGATGT ACCCCAGCTC ACTCAGCGCC AGGAGCAGGC CGTTGCCCTC ACGCGAGAGC ATGGCCGAAT CACCCGGCAG GAGTTGGCGG AGGCGCTGGG AATCTCCATC CGAACCGCGA GTCGTGAGCT GTCCACGTTG GTGGCCGTTG GGGCACTGGC CCCTGATGGC CAAGTTGGCC GCATGGCTGG TTACCACGTT CAACGAAACA GATTGAAGAG CCGTTGA
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Protein sequence | MSSKPHQIIG NSTALKATLA KAKKVAKTVL PVLITGESGT GKELFAQFIH DQSRRAQKPF VAVNCAAIPA ELLEAELFGY KKGAFSGATS DKDGLFVQAS TGTLFLDEIG DMPLPLQAKI LRVLQEGEVR PVGAKAVQKL DVRILSATHR DLTQMAADRK FREDLIFRLK GYAIQLPALG ERGHDIVKLA RAFLKSREDF AGIGLSRDAQ TLLMAYHWPG NVRELQNIIL AAAVDARRNI FAEHLAEHLP DAIDVEDPSM SVRERIISAL QESGSLALVD LQSRLKTPKP TIHRHLTSMV AEGDVSRSVV SGQTLFALAE PNVEGDVPQL TQRQEQAVAL TREHGRITRQ ELAEALGISI RTASRELSTL VAVGALAPDG QVGRMAGYHV QRNRLKSR
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