| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2405 |
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| Symbol | |
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| ID | 4482174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3069242 |
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| End bp | 3071860 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639723153 |
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| Product | lipopolysaccharide biosynthesis |
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| Protein accession | YP_866311 |
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| Protein GI | 117925694 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.7217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.305257 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGATA GAGAACGTCC TGCTGCGATG CGTCCTGAAT TACCCTTGCT TGGAGCGTCC
GGATTACCGG GCATGCCAAA TAGCCAGCCA GAAAATGAAG AGAATGTGCT GAGCTTTGGT
CGGCTGCTCT CTATTTTTCT ACGGCGTAAA TGGCAAATTT TATTTGTGAC CCTCATCGTG
GCACTGCCTA TGGTGATGAA TATCTATTCT GAGGCCCCGC GTTATCGCGC CACGGCCACC
CTACTGTTGG AGCAAAAGAG CTCTAAACTG ATTTCCATTG AGGATCTCTA TGGGGTGGAC
TCTTCCGGGC GAGACTATTT TGCAACCCAA TTACAGCTGA TTCAAAGCCG CAAATTGGCC
GCTGAGGTGG TTGAACGCGA ACGTTTGGAC CTAACCCCAG AGTTTAATAG CCGACTGCGT
GAACCCGAAC AGGAGTCGAT TTTAGCCCGC TGGATTCCCA AGGCATGGCG CACCTATCTG
CCCGTTAATA TTGGCACACA AGAGAATGCC GCGGTAGATC GCGCCATGCG CAATCAGCCT
TTGAGCGAGG CAGAGCTCAA TGGCATTATC TCAGCGGTCA AGGCGGGCAT TCAGACTGCC
TTGGTTGGGC GCAGCCAGCT CATAGAGGTC TCTTTTGTCT CAACCAATCC CAAATTGGCG
GCCCGCATCG CCAACAGCAT CATCCGCACC TATATTGATC AACAGTTAGA GTCGCGTTTA
CAGATTACCC AGCATGCGGC CAACTGGCTC ACCAAACGGC TAGAGGGGCT GCGTGAACAG
CTGGAGAAGT CGGAACGTGA GCTGCAACTC TATCAAGAAG TAACCGGTTT GGTGGGGACG
GAAGATGAAC AGCAGCGCTC TTCCATGCAG CAGATTGAGA CCGTGCAGGC TGAACAGATG
CAGGTGAGCA GCCGTAAGCG TATTGCCCAA GCCAAACTCG CAGAGACGCA AGCCGCTATC
CGCCGCTATG CTGGCCGACT GCATGAGGTC AATATTGATG GCTCAGATGT GTATCAAGAT
CTCAAACGGG AGCAAAATCG CGTCGAGCGC AGTATGGCGG AGTTAACCGA ACGTTATGGT
GCCAAACATC CGCGTATTAT CCGTACCCGT AATGAGTTAG AGCAGATCCA CAAAAAGGTG
GCCGAAGAGG TCATTCATGC GATTTCTGCC CAGGAGCAGC AGTATCGTAC CTTAGAGCGT
GAAGAGAACG CCCTGTTGAG CAAGCTGGAC TCTATGAAGT CAGGCATGCG TTCCAATAAG
AAAAAAACCT TCCAGCTCAA TAAATTAGAG CGGGAGGTCG CCGCCAACCG GCAGCTTTAT
GATCTGTTTT TACGGCGTTT TAAAGAGACC GATGTAAGCG AGGGGATGCA GACCGCCAAC
GCCCGCATTG TGGAGGAGGC GCAAGTCCCT GGCCGCAGTT TTCAGCCTTC GCGTAAATTC
AAGATCTTAA AAGCGGTGTT AATTGGGGCA CTATTGGGCA TGGCGCTGGC CTTTTTGCTG
GAATTTATGG ATCACACCTT CAAAACCCCG GATGAGTTGG AGGCAGAGAG TAAAGTACGG
GTTTTTGCCC TACTGCCCTT GCTTAAATTG AGGAATAAAA AAGAGATGCC TGAAGAGATG
CTGATCCGGC ATCCCAAATC CAACTATTCC GAGGCCATAC GAAGTTTACG GACCTCGGTG
TTGTTTTCGG ATATTGATAA CTCCCATCAG GTTATTACCG TTACCTCCTC CATACCCGAA
GAGGGTAAAA CCACGGTGGC CATCAATATG GCCCAGTCGT TCACCCAGGC GGGCGACCGT
ACCTTGTTGA TTGAGGCCGA TCTCCGTCGC CCCCGTTTGC GTAAGGTGTT TGGTATTAGC
GAGACCCAAG GGGTGACCGC CTTTCTGAAT GAGTTGGTGG AGCAGACCAC CCATGGCATT
CAAGAGATGC GACAGGGGAG CCTATCTAAA GGGGAACAGG GGCAACCGGT GTCATCGGTC
CCCGAGGTAA ACAGCGAGGG TGGGGCCAAG GTTGAGCCCT TAATGGATTG GGATGAAGGC
ATTGAGAAAA AGGTGCAGTT GGATAATCTG CCTCCCTCCT TTGCCTCACC ACGACAGGCG
TTGGAGAATT TTGAACGACC AGCTCGTGGT GGTGTGGCGC TAACGGAACA CTCCATCTAT
AACTTGCTGG CGCAAATTGT GGAGACCGAA AGCGGCCTGC ATGTTATGAC CAGTGGACCG
ACCCCCGCCT TTCCCAGTGA AATTCTCTCA TCGCAGCTGT GGAAGGATAT GATGAGTGAG
CTATGTCGGC GTTATGATCG TATTATCATT GATGCGCCAC CCTCACTCAT TGTGACCGAT
GCGCAGATTT TGGGCAAACA GTCCGATGCG GTGGTGTTTG TGGTTAAGGC CAGTCGTGCC
AATAAGGGCA CCGTGCTTAA CGCGCTTAGA CGCTTGCAGC ATAGCCAAAT TAATGTGGTG
GGGTGTGTGT TTAATTCGGT AGATATGAAG CGGCTTTCTT ACTATGGCAG CTCCTACCGT
TATGGTTACG GTTACGGTTA TGGTTACGGT TATGGCTACG GCTATGGTTC CCGCAGCAGC
TATACGGCTT ATGGCTATGG GGATGATAGC AAACGTTAG
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| Protein sequence | MKDRERPAAM RPELPLLGAS GLPGMPNSQP ENEENVLSFG RLLSIFLRRK WQILFVTLIV
ALPMVMNIYS EAPRYRATAT LLLEQKSSKL ISIEDLYGVD SSGRDYFATQ LQLIQSRKLA
AEVVERERLD LTPEFNSRLR EPEQESILAR WIPKAWRTYL PVNIGTQENA AVDRAMRNQP
LSEAELNGII SAVKAGIQTA LVGRSQLIEV SFVSTNPKLA ARIANSIIRT YIDQQLESRL
QITQHAANWL TKRLEGLREQ LEKSERELQL YQEVTGLVGT EDEQQRSSMQ QIETVQAEQM
QVSSRKRIAQ AKLAETQAAI RRYAGRLHEV NIDGSDVYQD LKREQNRVER SMAELTERYG
AKHPRIIRTR NELEQIHKKV AEEVIHAISA QEQQYRTLER EENALLSKLD SMKSGMRSNK
KKTFQLNKLE REVAANRQLY DLFLRRFKET DVSEGMQTAN ARIVEEAQVP GRSFQPSRKF
KILKAVLIGA LLGMALAFLL EFMDHTFKTP DELEAESKVR VFALLPLLKL RNKKEMPEEM
LIRHPKSNYS EAIRSLRTSV LFSDIDNSHQ VITVTSSIPE EGKTTVAINM AQSFTQAGDR
TLLIEADLRR PRLRKVFGIS ETQGVTAFLN ELVEQTTHGI QEMRQGSLSK GEQGQPVSSV
PEVNSEGGAK VEPLMDWDEG IEKKVQLDNL PPSFASPRQA LENFERPARG GVALTEHSIY
NLLAQIVETE SGLHVMTSGP TPAFPSEILS SQLWKDMMSE LCRRYDRIII DAPPSLIVTD
AQILGKQSDA VVFVVKASRA NKGTVLNALR RLQHSQINVV GCVFNSVDMK RLSYYGSSYR
YGYGYGYGYG YGYGYGSRSS YTAYGYGDDS KR
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