| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1482 |
|---|
| Symbol | |
|---|
| ID | 4483095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 1811367 |
|---|
| End bp | 1813571 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639722224 |
|---|
| Product | CheA signal transduction histidine kinases |
|---|
| Protein accession | YP_865397 |
|---|
| Protein GI | 117924780 |
|---|
| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0181827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTGG ATATGAGCCG TTTTTTAACC CGCTTTGTGG ATGAGGCGCG GGAGCATTTG
CAAAGTTTGG AAGAGGGGTT GGCACGGCTG GAGAGCCACC CGGGGGATGC GCAAAACATC
GCAGCAATTT TTCGTTCGGC CCATACCATT AAAGGGTCGT CCCGCATGTT AAAACTCACC
ACCATCAGTG ATACCGCCCA TAAATTAGAA GATCTGCTTG GTGTGCTGCG CGAAGGGCAG
GTGAGCCACA CCGCCGAGAT GGGCCGCTTG ATGGATCGTT GTGTGGATAC CCTGGCTGTG
CTGGTGGATC TGGTGGCGGC GGGACAACCT TTGCCCCCAC CCGATACGGC ACTTTGTGCG
GCGCTGAGCA AGGCGGCTAC GGTTGCTCCC GCAGAGACAG CGGCGCCTGG AGTAACGGAA
TCGGCGGCAG CCCCTCCCGT TGCGCTGTCG CCCCCTGAAA CAGCGGTTGT GGCTGATACC
ACCCCCCCCG TCAGCGATGC CACGACCTCC ACGCCTCTAA AGAGTCCAGA TAGCGTGCGG
GTGCGCATCG CCAAGTTGGA TGAGTTGATT AAACTCATGG GGGAGATGGT TTCTAGCCAA
GCCTATTTGC GGCAGCGTTT GGCCGAGAGC CGTCTGCTGG ATCTGCAAGC CCGCGAGCTG
GCCCAAAGCC ATGGCGAAAC GGTTGCCCAC AGTCAAGCGT TACACCAGCT TTATCTGGCG
TTTCGCGATG ATATGGCCAA CCAGGAGTTG CTGATGCAGG CGCTCAAGGA TAAGGCGCTG
GTCATGCGTA TGTTGCCGCT CTCCATGGTG TTGGATCCTA CCGCGCGCAT GGTGCGAGAG
CTGGGGCGGG ATCTGGGTAA ACAGGTGCAG TGTGTGGTCA GTGGGGGTGA GGTTGAGCTG
GATCGACAGA TCATCGACCA GCTGGGCGAC CCGTTGGTGC ATATGCTGCG CAACGCCATT
GACCACGGTA TTGAATCGCC AGAGCAGCGG CTGGCAGCGG GCAAGTCGGC CCATGGGCGC
ATCACCCTCA AGGCGCGTCA GGATAGCGGT TCGGTGGTGA TTGAGGTTGA GGATGATGGG
CAAGGCTTGC AGGTGGAGAA AATCCGTCAG AAGGCCCTGC AAAAGGGGTT GCTGGAACCG
CACCAAGCAG AATCGCTGGA GCCGGCGCAA ATTTTGGATC TCATTTTTAT GCCGGGTTTT
AGTACCAGCG CCATTGTGAC CGATCTCTCC GGGCGCGGTG TGGGTATGGA TGTGGTGCGA
AAGACCATTG TGGAGGGGCT GCATGGTGAG ATCAACGTGC AGGCCAGCGC GGGTAAAGGC
ACAAAATTTT CCATACGCTT GCCACTCTCT TTGGCCTTGA TGCGGATTTT GTTGTGCGAG
GTGGCGGGGC ACCCGTTTGC CTTTAGTGCC CAGCATATTC ATGAGCTGGT ACGTATTCCC
CAGAGTGCCA TTTTGACCAT GGCCGAGCGT AAGGTGTTTG TCCTGCGCAA TATGTTTATA
CCCTTGGTTG GTTTGGCGCA ACTGCTCAAC CTGCCTGCGG TGGAGGGGCG TGAGGCGCGG
GCTTTGCCCA ACAGCCAAGC CGATGTGCTG GTGGTGATTG TGCGGGGGCG TCAGGAGAAG
CTGGGTCTGA TTGTGGATCA GTTGCTGGAT GAGCGAGATA TGGTGGTTAA GCCCATGCCG
GAGCATATGC GGCGGTTGGC TTTGGTGAGT GGCATGGTGA TGACCGGTAA AAACCGATTG
GTCAGCGTGC TGCAAGCCCC TGCATTGATG GACCTGGTGC GCAGTGGGCG GGGTGAACGG
TTGGTGGCGG TTGAGCGTAG TGGGGCACCG GAGCGGCATA ATCGCCATGT GTTGGTGGTG
GATGACTCGC TTAATACGCG TGAGATTGAA AAAGAGGTGC TGGAAGCCTA TGGCTACCGT
GTCACCTTGG CCGATGATGG TTTGGATGGC CTGCAAAAAG CGCGGGCGCA ACGCTTTGAT
GCGGTGTTAA CCGATGTGGA GATGCCACGC ATGGATGGTT TCTCTTTGAC CGAGCAGCTG
CGTCAGAGTG CCGATTATCA GGGGGTACCG ATTATTATCA TCACCTCCCG GCAGAAGGAG
CAGGACAAGC GGCGGGGTAT TCAGGTTGGG GCCAGTGCCT ATATTGTCAA AGGTGATTTT
GACCAGAGCA ATTTAATTGA GATTTTGGAT AATTTGTTGG ATTAA
|
|---|
| Protein sequence | MALDMSRFLT RFVDEAREHL QSLEEGLARL ESHPGDAQNI AAIFRSAHTI KGSSRMLKLT
TISDTAHKLE DLLGVLREGQ VSHTAEMGRL MDRCVDTLAV LVDLVAAGQP LPPPDTALCA
ALSKAATVAP AETAAPGVTE SAAAPPVALS PPETAVVADT TPPVSDATTS TPLKSPDSVR
VRIAKLDELI KLMGEMVSSQ AYLRQRLAES RLLDLQAREL AQSHGETVAH SQALHQLYLA
FRDDMANQEL LMQALKDKAL VMRMLPLSMV LDPTARMVRE LGRDLGKQVQ CVVSGGEVEL
DRQIIDQLGD PLVHMLRNAI DHGIESPEQR LAAGKSAHGR ITLKARQDSG SVVIEVEDDG
QGLQVEKIRQ KALQKGLLEP HQAESLEPAQ ILDLIFMPGF STSAIVTDLS GRGVGMDVVR
KTIVEGLHGE INVQASAGKG TKFSIRLPLS LALMRILLCE VAGHPFAFSA QHIHELVRIP
QSAILTMAER KVFVLRNMFI PLVGLAQLLN LPAVEGREAR ALPNSQADVL VVIVRGRQEK
LGLIVDQLLD ERDMVVKPMP EHMRRLALVS GMVMTGKNRL VSVLQAPALM DLVRSGRGER
LVAVERSGAP ERHNRHVLVV DDSLNTREIE KEVLEAYGYR VTLADDGLDG LQKARAQRFD
AVLTDVEMPR MDGFSLTEQL RQSADYQGVP IIIITSRQKE QDKRRGIQVG ASAYIVKGDF
DQSNLIEILD NLLD
|
|---|
| |