| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1390 |
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| Symbol | |
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| ID | 4481809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 1690186 |
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| End bp | 1690953 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639722133 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_865307 |
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| Protein GI | 117924690 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.371905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAA AAACGATAAC AGCGAACGAC CTGGAATCGC GCTTGCTCTA TCGCGATGGT
CTTTTGCTTA TTATCAATAA ACCGGCGGGT ATTCCCGTGC ATGCCGGACC CGGTGGCGGT
GCCAATTTAG AGGCGTTGTT TGGTGGTTTG CGCTTTGGGC TGCCCAAAGC GCCTGCCTTA
GCACATCGGC TGGACCGTGA CACCAGTGGC TGTCTGGTTT TGGGTCGCCA TGCTAAAGCA
TTAAGCAAGT TAGGCAAACT CTTTAGCCAA GGGAAGGTGC AAAAAACCTA CTGGGCGGTG
GTGCAGGGGG GACCGCCGCA AGCGCAGGGC AGTATGGATT TTCCTCTGTA TAAAATCAGC
ACCGCGCAAC AGGGCTGGCG TATGGTGGTG GACCCAGAGC AAGGCAAGTC ATCTCTTACC
CTCTATCGGG TGTTGGGGCG TAGCGCCACC CATAGCTGGT TGGAGCTTAC CCCTAAAACG
GGACGTACCC ACCAAATCCG CGTGCATTGC GCCCATGTGG GCTTGCCTAT CGAGGGGGAC
CTCCAGTATG GCGCGGCCCC CAGTGAGCCG CAGCTTACCC TGCATCTGCA CGCACGACAG
ATTATTTTGC CCATCTCCGC CAGTAAAGCG CCCATCAATG TCAGCGCACC GCCCCCCCGC
GCCATGCGGG GTTTGTTGGA GCAGTGTGGC TACCGGGCTG AAGCGTGGCC CTCTACCCGT
TTTGAGCCCC ATACTCGGGC TGACGAAACC GGGCATGGGG CCGCATAG
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| Protein sequence | MKTKTITAND LESRLLYRDG LLLIINKPAG IPVHAGPGGG ANLEALFGGL RFGLPKAPAL
AHRLDRDTSG CLVLGRHAKA LSKLGKLFSQ GKVQKTYWAV VQGGPPQAQG SMDFPLYKIS
TAQQGWRMVV DPEQGKSSLT LYRVLGRSAT HSWLELTPKT GRTHQIRVHC AHVGLPIEGD
LQYGAAPSEP QLTLHLHARQ IILPISASKA PINVSAPPPR AMRGLLEQCG YRAEAWPSTR
FEPHTRADET GHGAA
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