Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_0305 |
Symbol | |
ID | 4481653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 352637 |
End bp | 353521 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639721054 |
Product | squalene/phytoene synthase |
Protein accession | YP_864238 |
Protein GI | 117923621 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTGGT TTACAGGTCC CACCATACCC TACCATCTGT TGCAGGATTT TGACTACTGC CAGCGGGTGG TGCGTGCCAA CAGTGAAAAT TTTCCTGTGG GTTCCTTGTT GGCACCGGCG CGTTTACGGC CCCATATCCA TGCGGTTTAT GCTTATGCTC GCATGGCCGA TGATTTTGCC GATAGCAGTG AGGGTAGCCC TAAGGAGAAG TTACAAAAGT TGGATGATTG GCAGCGCCGT TTAGAGGCCG CCCAGCGTGG AGAGGCCGAT CATCCGGTGT TTCGCGCCCT AGCCTATACC ATGCAGCAGA TGCAGTTGCC CATTGATCCC CTACGGGATC TGCTCATGGC GTTTCGTATG GATATTACCT GCAAACATTA TGATACCACC CAAGAGTTGC TGGAGTATTG CCGATATTCG GCCAATCCGG TGGGGCGCAT TGTGCTGCGG CTGGCGGGTT ATCGGGATGA AACCCTGATG GGTTATGCCG ACGCCATTTG CACGGCCTTG CAACTGACCA ACCATTGGCA GGATCTGGGT GAGGATCCGT GGAACGGGCG TCCCCTCTAT CTTCCTAGGG AGGAGATGGC CCGTTTTGGG GTCAAGGAGG CGGATATCTT ACAGCGGCGT TTTTCAGCCG CCGCCGCCGA GCTGATGATG CACCTAATTG CGCAGACGCG GGCGCTCTAT CTACAGGGGG AGCCCCTGCT GACCAAAGTG TCCTGGCCCC TTAATCTCGA ACTGGGGGCG ACCTGGGCGG GGGGCATGGC GGTCTTGGAG CGGATTGAGC AGTTGGGGGG TAATACCTTG CGGGAGCGGC CCTCCCTGGA TAAACGTGCC AAAATGGGCT GCTTGTTGCG GGGCCTAGGG CGGGTGTGTC GATGA
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Protein sequence | MSWFTGPTIP YHLLQDFDYC QRVVRANSEN FPVGSLLAPA RLRPHIHAVY AYARMADDFA DSSEGSPKEK LQKLDDWQRR LEAAQRGEAD HPVFRALAYT MQQMQLPIDP LRDLLMAFRM DITCKHYDTT QELLEYCRYS ANPVGRIVLR LAGYRDETLM GYADAICTAL QLTNHWQDLG EDPWNGRPLY LPREEMARFG VKEADILQRR FSAAAAELMM HLIAQTRALY LQGEPLLTKV SWPLNLELGA TWAGGMAVLE RIEQLGGNTL RERPSLDKRA KMGCLLRGLG RVCR
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