| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1484 |
|---|
| Symbol | |
|---|
| ID | 4927723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | - |
|---|
| Start bp | 1425579 |
|---|
| End bp | 1426604 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640166979 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001097995 |
|---|
| Protein GI | 134046510 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.269781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATTT TAAAAAAGTT GAGAGTATTA AAAACAAATA ACAAAGAAAA TGAATTATGT
CCTGAATTTA AAAAATATTT AGTTGAGTAT GAGGAGGCAA GGGATGAAGA TAATAAGCAA
ATCTCTACAA TAAGAGACAA TTTAGCAAGT CTCGGGGTGT TTTTAATGTT CTGCCAAAAC
AACAATCTGC ACCCACAAGA CTTCACGAAA CGAGAATTTA AAGCCTTTTT CAAATACTTA
GATAAGCAAA GAAACTGCGG CGTAAAGACT CGAAAGAAAT ATCTTCATAT GCTCTCAACA
TTCTATTATA TTCAGGGGTA CAAAAATCTT TTTGAATACC AACTTGATAG TAGGAAAACA
AGGAGATATT CAAACTTACC TGAAATACAT TATAGTAAAA TTACTCCAGA TGAGTATGAT
TTAATTAGGG ATAAATTATT CGAAAAAATT GATTATAAAA AAGAAGACCC ATATGCAGGT
TCATCTAATT TTTCACGCAT TAGGGATCTT ATCGCAATAG AAACCCTTTG GGAAACGGGC
TGTCGAAAAT CGGAAGTATT GAATCTTAAA TACATAGATT TCAACAAGTC AAAGAAAACC
TTTACGATCG TGGAAACTAA AAATTATACT GAGAGAGAAG TTCCTTTTTC AGACGAACTC
GCAGTAGCTT TGCAAGAGCA CATGTCTAAG AATAAGTTAA CTGGTTTGGA TGATTATATC
TTCCAAAATA CACAAGACCC TAAAAAACCA ATTCCCTCAA GACATCTTTC AAAAATATTT
AAAGAAGTAG TAGATGAACT AAGAAAAGAA TCTAAAATTG AAGGAAGAAG GGTAGTACTA
CATTCATTAC GACACGCAAG GATAGTTTTA TTTTTAAAAG AAGGAATGCC TATCCATGAA
GTTCAACGGA TTGCAGGGCA TGATTCAATA AATACAACGA TTGGATATGC ACACATGAAG
GAAATGGACC ATACAATAAT TCCAAAAGCT AAGGAAATCC TGAATCAATC AAATAAAAAA
CGATAA
|
|---|
| Protein sequence | MSILKKLRVL KTNNKENELC PEFKKYLVEY EEARDEDNKQ ISTIRDNLAS LGVFLMFCQN
NNLHPQDFTK REFKAFFKYL DKQRNCGVKT RKKYLHMLST FYYIQGYKNL FEYQLDSRKT
RRYSNLPEIH YSKITPDEYD LIRDKLFEKI DYKKEDPYAG SSNFSRIRDL IAIETLWETG
CRKSEVLNLK YIDFNKSKKT FTIVETKNYT EREVPFSDEL AVALQEHMSK NKLTGLDDYI
FQNTQDPKKP IPSRHLSKIF KEVVDELRKE SKIEGRRVVL HSLRHARIVL FLKEGMPIHE
VQRIAGHDSI NTTIGYAHMK EMDHTIIPKA KEILNQSNKK R
|
|---|
| |