Gene MmarC5_1413 details

Gene Information

• Locus tag: MmarC5_1413
• Symbol: rpl1P
• ID: 4928419
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: +
• Start bp: 1355117
• End bp: 1355758
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640166909
• Product: 50S ribosomal protein L1P
• Protein accession: YP_001097925
• Protein GI: 134046440
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0081] Ribosomal protein L1

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACAGTG AAAAAATACT GAACGCAGTG AAGGAGGCTC GAACTCTTGC TAAGCCGCGA 
AACTTCACGC AATCCGTAGA TCTCATCGTC AACTTAAAAG AGTTGGATCT TTCAAGACCT 
GAAAACAGAT TGAAAGAACA AATCGTTTTA CCAAGTGGAA GAGGTAAAGA CGTAGCGATT 
GCGGTTATTG CGAAAGGTGA CTTGGCTGCG CAAGCAGAAG AAATGGGCCT CACTGTAATA 
AGACAGGAAG AATTAGAAGA ATTAGGTAAA AACAAAAAAA CAGCTAAAAA AATTGCTAAC 
GCACATGGCT TCTTTATCGC TCAGGCTGAT ATGATGCCAT TGGTAGGTAA ATCATTAGGT 
CCTGTTCTAG GTCCTAGAGG TAAAATGCCA CAACCAGTGC CAGGTAATGC AAATTTAGCT 
CCATTAGTTG CTAGATTCCA AAAAACGGTT TCAATCAACA CAAGGGATAA AGCATTATTC 
CAAGTGTACA TTGGCCACGA ATCTATGAGC GATGATGAGC TTGCTGCAAA TGCTGAAGCA 
ATTTTAAACG TAGTGTCCCG AAAATACGAA AAAGGACTCT ACCACGTTAA AAGTGCATTT 
ACAAAACTTA CAATGGGCGC AGCTGCTCCT ATTGAGAAAT AG 

 

Protein sequence

MDSEKILNAV KEARTLAKPR NFTQSVDLIV NLKELDLSRP ENRLKEQIVL PSGRGKDVAI 
AVIAKGDLAA QAEEMGLTVI RQEELEELGK NKKTAKKIAN AHGFFIAQAD MMPLVGKSLG 
PVLGPRGKMP QPVPGNANLA PLVARFQKTV SINTRDKALF QVYIGHESMS DDELAANAEA 
ILNVVSRKYE KGLYHVKSAF TKLTMGAAAP IEK