Gene MmarC5_0396 details

Gene Information

• Locus tag: MmarC5_0396
• ID: 4928243
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: -
• Start bp: 356322
• End bp: 358376
• Gene Length: 2055 bp
• Protein Length: 684 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 640165900
• Product: triple helix repeat-containing collagen
• Protein accession: YP_001096926
• Protein GI: 134045440

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0162411
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA TATGTACATT ACTATTAGTA TTTGCACTTG TTTCCGGCTT GAATATTGCT 
TATGCAGATT CTGCTCCTAG CTTACCCCAT ACAATTTATG GGGACGTATC AATTAATGGA 
CTTCCTGCAA CAGGAACGTT AAAAGTACTT GTAAACGGAG TGGAAAGTGA GCAAGTGCAG 
GTTAATGATG GAGAGTTTGG TAAGGGATTA TTTGATCCCA AACTAGTTGT TAGTGGAGCT 
TCAGGGGATG AACTTACATT TTCATTTGAA GCTGAAAGTT ATACAATAAA TCCAGCTTAT 
AATATATACC TCGTAGATTC AGCTCAGTAC GTTTCAGAAA TTGACTTCGC ATCTGGAGGG 
TATACTCAAG TATTATTAGA ATTCACCGGA ACGGGTGATA CCGGTGATAC TGGAGATACC 
GGTGATACTG GAGATACCGG TGATACTGGA GATACCGGTG ATACTGGAGA TACCGGTGAT 
ACTGGAGATA CCGGTGATAC TGGAGATACC GGTGATACTG GAGATACCGG TGATACTGGA 
GATACCGGTG ATACTGGTGA CAGTGGATCA ATGCCACTTA ATCCCGAATT ATTCTACGGT 
ATCGCAACAA TTGGGGAAAC CAGTGCTTCA GGAACTTTAA ACGTTTATGT TGATGACGTA 
CTTCAAGATT CAATTGAAGT TCAAAACGGA TTATTTGGGG GCTCAGGACC GCTTTCAGAA 
AAACTCGTCG CAACAGGATA CGTTGGAGAA TCCAATGAAG TTAAATTCAC CTTAGTTTCT 
GGAGAGGAAA CTTATTCAAG TTTTATTGCG GAAATCGGTG AAGAAACTTA CACAGATGAA 
CTTCCATACG TTGAAGGGGT ACAAAACATT GATATTGAGT TTTCAGAAGT TACTGGAGAT 
GCCGGTGATA CTGGAGATAC CGGTGATACT GGAGATACCG GTGACAGTGG ATCAATGCCA 
CTTAATCCCG AATTATTCTA CGGTATCGCA ACAATTGGGG AAACCAGTGC TTCAGGAACT 
TTAAACGTTT ATGTTGATGA CGTACTTCAA GAGTCAATTG AAGTTCAAAA CGGATTATTT 
GGAGGGCCGT GCCCACTTGC AGAAAAACTC GTCGCAACAG GATACGTTGG AGAATCCAAT 
GAAGTTAAAT TCACCTTAGT TTCTGGAGAG GAAACTTATT CAAGTTTTAT TGCGGAAATC 
GGTGAAGAAA CTTACACAGA TGAACTTCCA TACGTTGAAG GGGAAGCGTA TTACATGGAA 
ATAAGTTTTT CTGAATCAGC AAATACGGAA GATAGCAATA GTAATTCAAA TACTAATGAA 
ACAAATAATT CGTCAATGCC ACTTTATCCA GAATTATTCT ACGGACTCGT TTATCTTGAT 
GATACATTAC CTTCCAGCAC ATTGAATGTG TATGTTGACG ATGTACTTCA AGATTCAATT 
GAAATTGAAA ATGGAGTATT TGGGGGAGAA GGGCCTCTTG ATGATAAACT GACTGCGACA 
GGTTACGAAA GCAGTAGTAA CGTAGTCACG TTTTCACTAG TTTCTGGAGA GGAAACTTAT 
TCAAGCTTTA CTGCAGAATT GTCAAATGCT ACTTACGAAA ATGAAGTTCC TTACGATGAA 
GGAGTACATT ACGTAATAAT CACATTCTCA AGTAAAGCCA CTGAAACTGG GGACTCTGGA 
AGTACAGGAG GTGGCGGATC TAGCGGAAGT AGTTCAGATG ACTCTTCATC GACAGTTATT 
ATCAGTTCAG ATTCGTCAGA AACTTCAGCC ACTACCAAAA ATTCAGATTC AGGAACTTTG 
ATGAAGACCA CTTCATCAGC AAATCCTGGT GAAACTTCGG AAGATACCGA ACAGACCACT 
GCGAAAAATT CACAGGATGT AACTTCAGAT AGTGAAACAT ACGATAATGA AACAGGAGTT 
GTGTTACAGC AGGAAAGCCC ACTTGGTGGA ATAAACATTT ACCTTGCTAT GGCTGCAATA 
TTATTGATAT TGATTGCACT AGCTGCAGCA TGGTATCAGT CAAGAGAAAA ACCAGAAGTT 
TTACCTCAGC CATAA 

 

Protein sequence

MKKICTLLLV FALVSGLNIA YADSAPSLPH TIYGDVSING LPATGTLKVL VNGVESEQVQ 
VNDGEFGKGL FDPKLVVSGA SGDELTFSFE AESYTINPAY NIYLVDSAQY VSEIDFASGG 
YTQVLLEFTG TGDTGDTGDT GDTGDTGDTG DTGDTGDTGD TGDTGDTGDT GDTGDTGDTG 
DTGDTGDSGS MPLNPELFYG IATIGETSAS GTLNVYVDDV LQDSIEVQNG LFGGSGPLSE 
KLVATGYVGE SNEVKFTLVS GEETYSSFIA EIGEETYTDE LPYVEGVQNI DIEFSEVTGD 
AGDTGDTGDT GDTGDSGSMP LNPELFYGIA TIGETSASGT LNVYVDDVLQ ESIEVQNGLF 
GGPCPLAEKL VATGYVGESN EVKFTLVSGE ETYSSFIAEI GEETYTDELP YVEGEAYYME 
ISFSESANTE DSNSNSNTNE TNNSSMPLYP ELFYGLVYLD DTLPSSTLNV YVDDVLQDSI 
EIENGVFGGE GPLDDKLTAT GYESSSNVVT FSLVSGEETY SSFTAELSNA TYENEVPYDE 
GVHYVIITFS SKATETGDSG STGGGGSSGS SSDDSSSTVI ISSDSSETSA TTKNSDSGTL 
MKTTSSANPG ETSEDTEQTT AKNSQDVTSD SETYDNETGV VLQQESPLGG INIYLAMAAI 
LLILIALAAA WYQSREKPEV LPQP