| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0240 |
|---|
| Symbol | |
|---|
| ID | 4927860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 208936 |
|---|
| End bp | 209811 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 640165739 |
|---|
| Product | tyrosine recombinase XerC subunit |
|---|
| Protein accession | YP_001096771 |
|---|
| Protein GI | 134045285 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.295303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGGATTT ATGATGGATT TAAATTTAAA GAACAAGACC AGAAAATAAT TGATAACTAT
ATGGCTTTCC GATCAGGACA TTCAGATAAA ACAGTTATAA CAAACATTTC TGGAATCAGA
ATTTTTATGA GATTTCACAA AAACAAAACT TTTGATGAAA TATCTCTTGA AGACGTGATA
GAGTTTTACA GAAAACATGA ATCTTCTGAA AACACAAAAA TTCAATATCT TTCACGGTTA
ACCCTATTTT ATAATTGGGG AATTAGTGAA AATTATTTTC TTAGAAATCC TGTTGAAAAG
TTTCTCGTAA CTTTAAGAAA AAGCAAAAAA GAACGGGAAT ATTTAACAAA AGAACAGACC
AATTATTTAC TTTCAAATGT TTTTGAATAT GAATATCGGT TATTTCTTAT GTTTTTCCTG
CATACTGGAG TTAGAAACAG CGAATTTAGA AATTTAAAAA TCCATGATGT AGATATGGAT
GAAAGAACCA TTAGAATTTT AGGAAAAGGC AGGAAAGAAA GATATGTATT CATTGATAAT
GAATTGTATT CTTATCTTAA AATCTGGCTC ATTCAAAGAG ATTCAAAATT TCCAAAATCT
GACCATTTCT TTGTAAACCG GCTTGGAAAT CCTATACGAT TAACACATCT TGTAAGTTTT
ACAGATTATT TAAACGAAGT TTCAAAAAAT AAAATAGGTT TTCGAATTAC ACCGCATATC
TTAAGACATA CATTTGCAAC ACGCTGCATA GATATGGGAA TGGACTTAAA GACCCTTTCT
TTAATTTTGG GTCATGAAGA CATAAAAACA ACTTCGATTT ATTTACACAA AAATAAGGAA
TCTTTAAAAA GAGAATTCTT ACGTGTAATG AATTAA
|
|---|
| Protein sequence | MRIYDGFKFK EQDQKIIDNY MAFRSGHSDK TVITNISGIR IFMRFHKNKT FDEISLEDVI
EFYRKHESSE NTKIQYLSRL TLFYNWGISE NYFLRNPVEK FLVTLRKSKK EREYLTKEQT
NYLLSNVFEY EYRLFLMFFL HTGVRNSEFR NLKIHDVDMD ERTIRILGKG RKERYVFIDN
ELYSYLKIWL IQRDSKFPKS DHFFVNRLGN PIRLTHLVSF TDYLNEVSKN KIGFRITPHI
LRHTFATRCI DMGMDLKTLS LILGHEDIKT TSIYLHKNKE SLKREFLRVM N
|
|---|
| |