| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmar10_1448 |
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| Symbol | hfq |
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| ID | 4285027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Maricaulis maris MCS10 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008347 |
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| Strand | + |
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| Start bp | 1588857 |
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| End bp | 1589129 |
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| Gene Length | 273 bp |
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| Protein Length | 90 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638140930 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_756678 |
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| Protein GI | 114569998 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.581854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.000378907 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTCGCACG ATAAAAAACA AAATCTCCAG GATGTCTTCC TGAACTCTGT GCGTAAAACG
AAGACGCCCC TGACCATTTT TCTCGTCAAC GGGGTCAAGC TGCAGGGCGT TGTCACCTGG
TTCGACAATT TCTGTGTCCT GCTGCGCCGT GACGGGCTGT CCCAGCTTGT CTACAAGCAC
GCCATCTCGA CCATCATGCC GGCCGCGCCA GTGTCGCTGT TCGAAGATGA CAAGGCGGAT
GACGACGCAG CTGAAGAGAG CGCCACCGAT TGA
|
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| Protein sequence | MSHDKKQNLQ DVFLNSVRKT KTPLTIFLVN GVKLQGVVTW FDNFCVLLRR DGLSQLVYKH
AISTIMPAAP VSLFEDDKAD DDAAEESATD
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