| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1571 |
|---|
| Symbol | |
|---|
| ID | 4270593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 1796128 |
|---|
| End bp | 1797891 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638126328 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_742408 |
|---|
| Protein GI | 114320725 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00763489 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGGTCG CCGACGAGCA CGATCTGGAA CAGGCGCTGA TCAAGGCGCG GGGCAAGCAG
GTTCGGCGCC TCGGCGGCAT CCTCCTGGAA CGGGGCCTTA TCGACGAGAC CACGCTGCGT
GCGGCCTTGG ACACCCACCG GGCGCAGCCG CACCTGCAGC TTGGCCGCTG GCTGGTGGAG
CATCGCCACA TCACCCGGGA GCAGCTCGAG GACGCCCTGT GCGAGCAGCT CGGGATCCCT
CGGGTGGATC TGGCGGGGTT TGTGGCCAAG CCGGAGGTCG CCGGGCTGAT CCCCTACGAG
ATGTGCCTGC GACTCAACGT CCTGCCCCTG GCGCGCCACC GATCGGTGCT GATGGCTGCC
ACCGCCACCC CGACGGACGA GGAGTTGCTG GCCAACCTCC GTTTCCATAC CGGACTCAAC
GTGGAGCCGG TCCTGGCGCC TCCCCATCAG ATCAGCAGCG CGATTAATCG CTCCTATAAA
TCCCTGGCCA TCGGCGGTGA GGAGGGCATG GACACCCTGC TGACCACCGA TGAGGACCGG
GACCTGCGCC GCGACCAGGA GATAGAGAGC CAGGCCAGCA GCCGCCCGGT GGTGCGGCTG
GTCAATACCG TCATCCTGCA GGCGATCAGC CGCGGGGCGT CCGACATCCA CTTCATGCCA
CGCGAGAACG ACCTGGCGGT GATGTTCCGT ATCGACGGCG CCATCCAGCG GGTGCGACTG
GTGGACAAGG CGCAGCTGGC GGCGGTTGTC GCCCGCATCA AGATCCTGGG TCGCATGAAT
ATTGCCGAAA AGCGCCTGCC CCAAGACGGC CATGCGCGGG TGCGGGTGAG CGGCAAGGCG
GTGGACCTGC GCATTTCGGT GATGCCCACC TACACCGGCG AGAGCGTGGT CGTCCGCATC
CTCAACAAGG CCCACGGACT CAAGCGGCTG GAGGAAATCG GGTTCTCTGA GCGCGACGAC
CGGATCGTCC GCACCCTGAT CCAGCGCCCC CAGGGGATGA TCCTGGTCAC CGGACCCACC
GGCTCGGGCA AGTCCACCAC CCTCTACTCC CTGCTCCAGG AGGTGCGTCG TGCCGAGCCC
CACATCCTTA CCGTGGAGGA GCCGGTGGAG TACGACATGG AGGGGGTGGA ACAGATCCAG
GTGAATGCCG GCATCGGCTA CACCTTTGCC CGGGCGCTGC GCAATATCCT CCGCCACGAT
CCCGATGTGA TCATGGTCGG GGAGATCCGC GATCTGGAGA CGGCCGAGAT CGCCACCAAG
GCGGCGCTCA CCGGCCACAT GGTCCTTTCC ACCCTGCACA CCAACGATGC ACCCAGCGCC
GTGACCCGCC TGGTGGACAT GGGGGTGGAG CCCTACCTGG TGAGTTCCAC CGTGATGGGC
GTGCTGGCCC AACGGCTGGT CCGTGTTATC TGTACCCATT GCCGGGTGGC GCATGAGCCA
GAGGCGCTGG TGCGCCAGGT GATGGGCGTC GGCGACGAGC CATTCTGGAC CGGGACCGGC
TGTGATCGCT GCGACTATAC CGGGTTTCAC GGGCGTGCCA TGGCCTATGA ACTGCTGGTG
GCCGATCGCA ACATGGCCAC CCGTATCGCT CAGGGCATCA CCACCGAGGC GCTGAGGGAA
CTGGCCGTGG AGGGGGGTAT GCGCAGTCTG ACCCGGCACG GCCTGCACCT GGCGCGTACC
GGGGTCACCA CCCTGGAAGA GGCCTTCCGG GTCCGGCTGG AGGACCTGGA CGATGTCAAG
AAGGTGGTGG ACGCGGGTTA CTGA
|
|---|
| Protein sequence | MKVADEHDLE QALIKARGKQ VRRLGGILLE RGLIDETTLR AALDTHRAQP HLQLGRWLVE
HRHITREQLE DALCEQLGIP RVDLAGFVAK PEVAGLIPYE MCLRLNVLPL ARHRSVLMAA
TATPTDEELL ANLRFHTGLN VEPVLAPPHQ ISSAINRSYK SLAIGGEEGM DTLLTTDEDR
DLRRDQEIES QASSRPVVRL VNTVILQAIS RGASDIHFMP RENDLAVMFR IDGAIQRVRL
VDKAQLAAVV ARIKILGRMN IAEKRLPQDG HARVRVSGKA VDLRISVMPT YTGESVVVRI
LNKAHGLKRL EEIGFSERDD RIVRTLIQRP QGMILVTGPT GSGKSTTLYS LLQEVRRAEP
HILTVEEPVE YDMEGVEQIQ VNAGIGYTFA RALRNILRHD PDVIMVGEIR DLETAEIATK
AALTGHMVLS TLHTNDAPSA VTRLVDMGVE PYLVSSTVMG VLAQRLVRVI CTHCRVAHEP
EALVRQVMGV GDEPFWTGTG CDRCDYTGFH GRAMAYELLV ADRNMATRIA QGITTEALRE
LAVEGGMRSL TRHGLHLART GVTTLEEAFR VRLEDLDDVK KVVDAGY
|
|---|
| |