| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_0587 |
|---|
| Symbol | |
|---|
| ID | 4268321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 635465 |
|---|
| End bp | 639610 |
|---|
| Gene Length | 4146 bp |
|---|
| Protein Length | 1381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638125330 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_741431 |
|---|
| Protein GI | 114319748 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0305] Replicative DNA helicase |
|---|
| TIGRFAM ID | [TIGR00665] replicative DNA helicase
[TIGR01443] intein C-terminal splicing region
[TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0434088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000000000216733 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAGA CGGAATCCAG CTCGGCAGCG ACAGACGCGC TCAAGGTTCC GCCTCACTCC
ATAGAGGCGG AACAGGCCGT GCTCGGCGGC CTGATGCTGG ATAACAACGC CTGGGACCAG
GTGGCGGACC GGGTCACGGA GGAGGACTTC TACCGCCGTG ACCACCGACT GATCTGGCGG
GCCATCGCCA CCCTGGCCGA CGAGGGCCAG CCGGTGGATG CCGTCACCAT CTCCGAATGG
CTCAAGAACC ACGAGCTGCT CGAGGCCGCC GGCGGCATGG GCTACCTGGG GGCGCTGGCC
AGCGACACCC CCAGCGCCGC CAACATCAAG GCCTACGCCG ACATCGTCCG CGAGCGCTCG
GTGATGCGCC AACTGATCCG CGTTGGCACC GACGTGGTGG ACAGCGCCTT CCAGCCGGAG
GGACGCGACA GCAAGACGCT GCTGGACGAG GCCGAACGCC GCATCTTCCA GATCGCCGAG
CAGACCGGCC GCCACAAGCA GGGCTTCCGT GGCCTGAAGG AACTGCTGCC CGGCGTGGTC
GAGCGCATCG ACCAGCTCTA CCGCCAGGAC GGCGAGGTCA CCGGCCTGGC CACCGGCTTC
GACGACTTCG ACCGCATGAC CTCCGGCCTG CAGAACGGTG ATTTGGTCAT CGTGGCGGGA
AGGCCGTCGA TGGGCAAATG CATTATGGCC GGCTCCCGGC TGGTGGACCC GCGCACCGGC
GGCAGGGTCA CCATCGATGA ACTGGTGGCA CGGCAGGAGG CAGAAGTCCT GACACTGGGC
GACGACTTCC GCCTGGGGAT GGCCCGCCCC GCCGCCTTCG TCGATGATGG CATCAAGCCG
GTCTATCGGG TGCGCACGGC CAGCGGTCGT GAGATCGCCA CCACGCTGAC CCATCCCTTC
CTGACCGGGG ACGGCTGGCG CCCGTTGAGC GAAATCGGTG TCGGCGAGCA CGTGGCGGTC
CCGCGGCGCA TCCCGGTATT CGGTCGGGAA CGGCTGCCCG AGCATCAGGT GAAGCTCCTA
GCCTACTTCC TGGGGGACGG GGGGACCACG CAGACCAGCC CCCTGTTCAC CAATGCCGAT
GAGCGAGTCC GGGGAGACTT CACCGACGCG GTGACGGCTA TGGGTGGGGT GCGCTGTGTC
CCGGTGGGCT CCCCGGGGCG CACGCCGTCA TTGCGGGTCA GCCGGTGTCG CACGGCGCTC
CAATCCGGTC GGGATGTCTT CGCGAAAGCG CTCAAGGGCG CCATGCAGCA GCTTCAGCTC
ACCGGTGAGG CGCTGGCCGA CGCCTTGGGG GTCAGTAAGG CGGCGGTCAG CGGTTGGATC
AATGCCCGGA CCGTTCCGGC ACCGGCGACC TATCAGAGAC TCTGTGCCAC GCTGGCATCC
AGTGGCCAGG CGCTTCCGGG GACGGACTAC GCGGATATCG GGAAGAACAG CCCGAATCCG
GTGGCCGCTT TCCTGGACCG GCACCGGCTT TGGGGCAGGC TGGCGACGGA AAAAGCCGTT
CCCGAGGTGG TCTTCCGCTT GAAACGCGGG CAACTGGCGC TGTTCCTCAG CCGGCTCTTT
GCCTGCGATG GGAGCGCGTT TGTTCAGGGT AACGGCCAGG CCCGGATCAG TTACGCCACC
TCCAGCCGTG CCCTCGCCAG GGACGTCCAG CATCTGCTGC TGCGCTTTGG CATCCTCAGC
AAACTGCGGG AGAAGCGAAA CCGGTACCCC GGGCTGCAAC ACGCGCCCTG GGAGCTTGAG
GTGATGGACC AGGCCAGCCT CCGCGCCTTT TGCGAGGAGA TTGGCATCTT CTCCAAGGAG
GAGCAGGTCA GGGGCGTGCG CGAGGCCCTG GCGGGAAAGC GGCGACACAA CAACGTCGGT
GGCTTGCCCT GGTCGGTGAG CCGCTACGTG CTCGCCGCCA AGGGGGAGCG GAGTTGGGGC
GACATCTACC AGGCGGCGGG CCGGGTGTTG CCAGAGGGTT TCAACGCGCA CCTGACCGGT
CGCAGCGCTC GCCGTCTTTC TCGCCACCGC GCCAGTGAAC TGGCTGACCT GCTGCAGGAC
GACTACCTGG CCCGGCTCGC CACCTCTGAT CTGCATTGGG ACGAGATCGT CGAGATCGAG
TACATCGGCG CGCACCAGGT CTACGACCTG ACCGTGGACG GTACCCACAA CTTTGTCGCC
GAGGATGTCT GCGTCCACAA CACCACCTGG GCGATGAACA TCGTCGAGCA CGCGGCGATG
AAGCAGGAGG CGCCCACGGC GGTGTTCAGC ATGGAGATGC CCGGTGACTC GCTGGCGATG
CGTATGCTCT CGTCGCTCGG CCGGGTGGAA CTGCAGCGCA TCCGTTCCGG CCGGCTGGAG
GACGACGACT GGCCGCGCCT CACCTCCACG CTCAGTCTGC TCTCCCAGGC CAAGCTGTTC
ATCGACGACA CCCCGGGGCT GTCCCCCTCC GAGATGCGCG CCCGGGCCCG CCGGCTCAAA
CGGGAGCACG GCCTGGGGCT GATCGTCATC GACTATCTGC AGCTCATGCA ACTGCCCGGG
GCGAAGGAAA ACCGCGCCCA GGAGCTCTCC GAGATCTCCC GCTCGCTCAA GGGGCTTGCC
AAGGAGCTGG ACGTTCCGGT CATCGCCCTG TCCCAGCTCA ACCGTTCGCT GGAACAGCGC
CCCAACAAGC GCCCGGTTAT GTCCGATCTT CGCGAATGCG TGACCGGCGA TACCCGCGTG
CTTCTCGCGG ACGGCCAACG GGTGCCAATC CGCGATCTGG TGGGGCAGAC GCCGGAGGTC
ATCTCGGTCA ATGCAGAGGG CAGGTTGGAG CCGGCCAAAA CGGACTTGGT CTGGTCCGTT
GGCGTAAGGC CATTGCTCCA GGTCAGGTTG GCCAGTGGCC GTACGATCCG CTGCACGCCC
GAACATCGGC TTCGCGGGCT CTGGGACTGG AAAGAAGCGC GTGATATCCG TGTGGGGGAC
CGCCTGGGTA TTGCGCGGGA GCTCCCGGCC CCGAAAGTAA CCAAGCGATG GGCAGAGCAC
GAACTCGTGC TGCTCGCGCA CCTTGTCGGG GACGGCAGCT ATATCAAGGG GCAGCCGCTG
CGATACACCA CCGCAAGTGA GGCCAACAGC GAGGCGGTGT CGCGCGCGGC GGAGGCTATG
GGAAGCACGG TCACGCGTCA CCCCGGACGC GGACAATGGC ATCAACTGGT CATCAGCGGC
AACGGCAACC GGTGGCACCC CCAAGGCGTT GGCAAATGGC TCAAGCAGCT GGGGGTGTTC
GGCCAGCGCT CGCGTGAAAA GCATCTGCCC CAAGAGGTGT TTCAACTCGA CAACGACCAA
CTCGCGCTCT TCCTGCGCCA TCTCTGGGCA ACGGACGGGA GTATTACGCA GGGAAGCGCT
GGCCGTCCGC GGATCTACTT TTCCACCGCT AGTCGCCACC TGATCCAGGA TGTGGCTGCG
CTGCTGCTCC GTTTCGGCAT TGTGGGGCGG ACAAAGCACA TCACCCACGG TGACGGCGAG
GGCTGGTTCA CCCTGGATAT CTCCGGGGCG GTGCAGCAGC AGCGGTACCT CGAAAAAATC
GGTGCGTTTG GCCACCAAGC GCATAACGCC CGGCGCGCCC TCCAGCACCT CCGTGGATTA
GTAGAGAATA CCAACGTGGA TACCTTGCCG GAGGAGGTCT TCAACTACAT CCGGGAGCGG
ATGAGGGAAG AGGGAATCAC CCATCGGCAG ATGGCGGCGC TCCGTGGAAC GGCTTATGGC
GGATCAGCTC ATTTCACGTT CTCACCGTCC AGAGAGACGC TTTTGAGCTA CGCCGATATT
CTGAATGACC AGCGCCTCCG CATGTTGGCC AACCAGCACG TGTTCTGGGA TCGCGTCGTC
TCCGTCGAGC CGGCCGGAGA GGAAGAGGTC TTTGACCTGA CGGTGCCTGG CAATGCGTGC
TGGCTTGCGG ATGGCATCGT CAGCCATAAC TCCGGCGCGA TCGAGCAGGA TGCAGACGTC
ATTGTCTTCA TCTACCGGGA CGAGGTGTAC AACCCGGATA CGCCGGAGAA GGGCGTGGCG
GAGATCATTA TCGGCAAGCA GCGTAACGGC CCCATTGGCA CGGTGAAGCT CACCTTCCTG
GGCCGGTTCA CGCGCTTCGA GAACCACATC GAGGAATACT ACCCCGGCGG CGGGTTGCCC
GAATGA
|
|---|
| Protein sequence | MAQTESSSAA TDALKVPPHS IEAEQAVLGG LMLDNNAWDQ VADRVTEEDF YRRDHRLIWR
AIATLADEGQ PVDAVTISEW LKNHELLEAA GGMGYLGALA SDTPSAANIK AYADIVRERS
VMRQLIRVGT DVVDSAFQPE GRDSKTLLDE AERRIFQIAE QTGRHKQGFR GLKELLPGVV
ERIDQLYRQD GEVTGLATGF DDFDRMTSGL QNGDLVIVAG RPSMGKCIMA GSRLVDPRTG
GRVTIDELVA RQEAEVLTLG DDFRLGMARP AAFVDDGIKP VYRVRTASGR EIATTLTHPF
LTGDGWRPLS EIGVGEHVAV PRRIPVFGRE RLPEHQVKLL AYFLGDGGTT QTSPLFTNAD
ERVRGDFTDA VTAMGGVRCV PVGSPGRTPS LRVSRCRTAL QSGRDVFAKA LKGAMQQLQL
TGEALADALG VSKAAVSGWI NARTVPAPAT YQRLCATLAS SGQALPGTDY ADIGKNSPNP
VAAFLDRHRL WGRLATEKAV PEVVFRLKRG QLALFLSRLF ACDGSAFVQG NGQARISYAT
SSRALARDVQ HLLLRFGILS KLREKRNRYP GLQHAPWELE VMDQASLRAF CEEIGIFSKE
EQVRGVREAL AGKRRHNNVG GLPWSVSRYV LAAKGERSWG DIYQAAGRVL PEGFNAHLTG
RSARRLSRHR ASELADLLQD DYLARLATSD LHWDEIVEIE YIGAHQVYDL TVDGTHNFVA
EDVCVHNTTW AMNIVEHAAM KQEAPTAVFS MEMPGDSLAM RMLSSLGRVE LQRIRSGRLE
DDDWPRLTST LSLLSQAKLF IDDTPGLSPS EMRARARRLK REHGLGLIVI DYLQLMQLPG
AKENRAQELS EISRSLKGLA KELDVPVIAL SQLNRSLEQR PNKRPVMSDL RECVTGDTRV
LLADGQRVPI RDLVGQTPEV ISVNAEGRLE PAKTDLVWSV GVRPLLQVRL ASGRTIRCTP
EHRLRGLWDW KEARDIRVGD RLGIARELPA PKVTKRWAEH ELVLLAHLVG DGSYIKGQPL
RYTTASEANS EAVSRAAEAM GSTVTRHPGR GQWHQLVISG NGNRWHPQGV GKWLKQLGVF
GQRSREKHLP QEVFQLDNDQ LALFLRHLWA TDGSITQGSA GRPRIYFSTA SRHLIQDVAA
LLLRFGIVGR TKHITHGDGE GWFTLDISGA VQQQRYLEKI GAFGHQAHNA RRALQHLRGL
VENTNVDTLP EEVFNYIRER MREEGITHRQ MAALRGTAYG GSAHFTFSPS RETLLSYADI
LNDQRLRMLA NQHVFWDRVV SVEPAGEEEV FDLTVPGNAC WLADGIVSHN SGAIEQDADV
IVFIYRDEVY NPDTPEKGVA EIIIGKQRNG PIGTVKLTFL GRFTRFENHI EEYYPGGGLP
E
|
|---|
| |