| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mfl270 |
|---|
| Symbol | |
|---|
| ID | 2898044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mesoplasma florum L1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006055 |
|---|
| Strand | + |
|---|
| Start bp | 309823 |
|---|
| End bp | 311238 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 4 |
|---|
| GC content | 28% |
|---|
| IMG OID | 637520310 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_053511 |
|---|
| Protein GI | 50365086 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 66 |
|---|
| Plasmid unclonability p-value | 0.000329288 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ATATGGATAA AAAAGAAATA GCAAAAATTA AAACAATTGA AGATTTTTAT
GAAGCAACAG TAGAATTTGC AAAACAAAAT AATAATGAAA TAACATCTGA AGAAGTTCAA
ATGAGTTTTA GTAAAATATT TGCAAATGCA ACTGATAATG AATATGAAAA ATTATTAGAA
GATTTACAAG CAAAAGGAAT TCAATTCACA GATTTAGAAG ATATTGACAT TGATGAAGAA
ATAGATCTTG ATGAAGAAGT TGATGAAGAT GCTGAAATAA GTGATGATGA TGCTTATGCT
GATGAATTAA TTGGAGAAAG AAAAGGTCCA GGTAGAAGAC CAAAAGATGC TGGTACAACT
AAATATAGAG TTGGATCAAT TTCAAATGAA ACTAAAATTC AAGATTTAAT TAAAACATAC
TTTTCAACTA TTGGACAAAC TAAAATTTTA ACTAAAGATC AAGAAATTGT TTACGCTAAA
TTAGCTAATT CAGAAGATCC AGAAGAAAGA AAAGAAGGAA GAGATATGTT AATCACTTCT
AACTTAAAAT TAGTTATTTC AGTTGCTAGA AAACACTTAA ATAGAGGTTT AGATTTTGCA
GATTTAATTG AAGAAGGAAA TATTGGTTTA ATTAAAGCTG TTGATAAATT TGATTATGAA
AAAGGGTTTA AGTTTTCAAC ATATGCAACA TGATGAATTC GTCAAGCTAT AACAAGAGCT
ATTGCTGATC AAGCTAGAAC AATTAGAATA CCAGTTCATA TGGTTGAAAC AATTAATAAA
CTTTCTAGAA TTGAAAGACA ATTAACTCAA GAACTAGGAA GAGAACCATC ATCAAAAGAA
GTTGCAGAAA GAATGGGTGG AGACATGACA GCTGAAAAAG TTGTTGAAAT TAAAAAAATT
GCTGTTGAAC CTGTTAGTTT AGAAAAACCA TTTGGTGATG AAGATGACAC TCATTTTGGA
GATTTCGTTG AAGATAAAGA TATGATTTCT CCAACAGACT TTACTGAAAA AGAAATTTTA
AGAGAAGTTA TAGACAAAGT ATTTGAAGAT ATGCCAGCAA GAGAAGAAAA AGTTATTCGT
ATGAGATACG GGATTGTTCC AACAAAAGTT AGAACATTGA TTAGACTTGC TGAAGAATGT
AATGATGAAA CTGCTGGAGA ATTAGCTAAA GCAATTAATA AACTAGATAT TCACTTAGAG
ACTCCTGTTG AAAAAATAAG AACAGTTGAT AGTAAAATAA TTCAAGACCA TTTATTAAAA
TATGAAGCAT CAAAAACTTT AGAAGAAGTT GGTAAAGAAT TAAATGTTAC AAGAGAAAGA
ATTAGACAAA TTGAAGCTAA AACAATTAGA AAATTAAAAC AACCTGCAAA TGCTAATAAA
TCAGGTAAAG TTTTAAAAGA ATTTTACAAA GGTTAA
|
|---|
| Protein sequence | MKKYMDKKEI AKIKTIEDFY EATVEFAKQN NNEITSEEVQ MSFSKIFANA TDNEYEKLLE
DLQAKGIQFT DLEDIDIDEE IDLDEEVDED AEISDDDAYA DELIGERKGP GRRPKDAGTT
KYRVGSISNE TKIQDLIKTY FSTIGQTKIL TKDQEIVYAK LANSEDPEER KEGRDMLITS
NLKLVISVAR KHLNRGLDFA DLIEEGNIGL IKAVDKFDYE KGFKFSTYAT WWIRQAITRA
IADQARTIRI PVHMVETINK LSRIERQLTQ ELGREPSSKE VAERMGGDMT AEKVVEIKKI
AVEPVSLEKP FGDEDDTHFG DFVEDKDMIS PTDFTEKEIL REVIDKVFED MPAREEKVIR
MRYGIVPTKV RTLIRLAEEC NDETAGELAK AINKLDIHLE TPVEKIRTVD SKIIQDHLLK
YEASKTLEEV GKELNVTRER IRQIEAKTIR KLKQPANANK SGKVLKEFYK G
|
|---|
| |