| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_4434 |
|---|
| Symbol | |
|---|
| ID | 5833468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 4933390 |
|---|
| End bp | 4935078 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641370227 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001641873 |
|---|
| Protein GI | 163853830 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.51276 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCG CCCGGGAGGA AGAGGCGGCA CCGGCCGAGC GCCGCCGCAA GTTCGAGGAA
GTTGCCGTGC CGGAGCGGGC CGATCGCTAC GAGACGCTCG TCAGGGATTT CCGCTGGGAG
ATCCCGGAGC GCTACAACAT CGCGGCCGAT GTCTGCGACC GCTGGGCGCT GAGCGAGCCC
GACCGCACCG CGCTCCTCGT GCTCGGCCCC GACGACCGGC CCGAGCCGGT GAGCTACGGC
CGCCTGCGCT CCGATTCGCT GCGGCTGGCG GCGGCGCTGG CCGCGCGCGG CGTCGGGCCG
GGCGACCGGG TGGCGGTGCT GCTGCCGCAA TCGGTGGCGG TGGTGGTGAC CCATTTCGCC
GCCTACCGGC TCGGGGCGAT CGCACTCCCG CTCGCCGGCC TGTTCGGTGA GGCGGCCCTG
CGCCATCGCA TCGCCGATTC CGGCGCCTGC GCCGTCGTCA CCGACGCGCC CGGGCTGACC
AAGCTGGAGC GGCTGCGCGC CGACCTGCCG GATCTCACAA CGATCCTCTC GGTCGATGGG
GCAGGGGAGG CCGCGGAGGG TTTCTTCGCG GCTCTGGAGA ACGCCCCGGA CGGGCTCGCG
ACGCGGGCGA CCGGGCCGGA CGATCCGGCC CTGATGATCT ACACCTCCGG CACGACCGGC
CTCGCCAAGG GGGCGCTGCA CGGCCACCGG GTCCTGCTCG GCCACCTGCC GGGCTGGAGC
GTGATGCACG GCTTCCCGCC CGAGGGAACC GGGCTGATGT GGACGCCCTC CGACTGGGCC
TGGGCCGGGG GCCTGCTCAA CGTGCTGATG CCGTCCCTCC GGCTCGGCAT GCCGGTGGTC
GCGAAGGCCT CGGGCCGGTT CGAGCCGGAG GCGGCGTTCC GGCTGATGGC GGATCTCGGC
GTCACCCACG CCTTCCTGCC GCCGACGGCT TTGCGCATGC TGCGCGGGGT GGCCGATCCG
CGCCAAAGAT TCGACCTCTC GGCCCTGCGC AACATCGCCT CCGCCGGCGA GGCGCTCGGG
GCCGAGACCT TCGATTGGGC GCGTGACGCC CTCGGCCTCA CCATCGGCGA GGCCTATGGC
CAGACCGAGT GCAACCTCGT TCTCGCCTCC AGCGCTCGGA TCGGCGTGGC GCGGGCCGGC
GCGACGGGCA AGCCGGTGCC CGGCCACCGC GTCGCGGTCC TGCGCGAGGA CGGGACCGAG
GCGGACGCGG ACGAGACCGG CGAGATCGCC GTGCGCGCCC CCGATCCGGT GCTGTTCCTC
GGCTACTGGC GCCAGCCCGA GGCGACCGCC AAGAAATTTC GCGACGGCTG GTGGATGACC
GGCGACCAAG CGCGGCGCGA CGCCGACGGC TACATCCGCT TCGTCGGCCG CGAGGACGAT
CTCATCACCT CCGCCGCCTA CCGAATCGGC CCGGCGGAGA TCGAGGCCTG CCTCTGCGCC
CATCCGGCGG TGGCCCTCGC CGCCGCGGTC GGCGTGCCCG ATCCGCTGCG CACCGAGACC
GTGAAGGCCT TCGTCATGCT GCGCGCGGGC TTCTCGCCCT CGGACGCGCT GGCCGCGGAG
ATCCTCGCCT TCGCCAAGGC CCGGCTCTCC GCCCACGAGG TGCCGCGCGC GCTCGCGTTT
CGCGACACCC TGCCGATGAC GACGAGCGGC AAGATCATCC GGCGGCAGTT GCGGGACGAG
CCGGCCTAA
|
|---|
| Protein sequence | MQRAREEEAA PAERRRKFEE VAVPERADRY ETLVRDFRWE IPERYNIAAD VCDRWALSEP
DRTALLVLGP DDRPEPVSYG RLRSDSLRLA AALAARGVGP GDRVAVLLPQ SVAVVVTHFA
AYRLGAIALP LAGLFGEAAL RHRIADSGAC AVVTDAPGLT KLERLRADLP DLTTILSVDG
AGEAAEGFFA ALENAPDGLA TRATGPDDPA LMIYTSGTTG LAKGALHGHR VLLGHLPGWS
VMHGFPPEGT GLMWTPSDWA WAGGLLNVLM PSLRLGMPVV AKASGRFEPE AAFRLMADLG
VTHAFLPPTA LRMLRGVADP RQRFDLSALR NIASAGEALG AETFDWARDA LGLTIGEAYG
QTECNLVLAS SARIGVARAG ATGKPVPGHR VAVLREDGTE ADADETGEIA VRAPDPVLFL
GYWRQPEATA KKFRDGWWMT GDQARRDADG YIRFVGREDD LITSAAYRIG PAEIEACLCA
HPAVALAAAV GVPDPLRTET VKAFVMLRAG FSPSDALAAE ILAFAKARLS AHEVPRALAF
RDTLPMTTSG KIIRRQLRDE PA
|
|---|
| |