| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3960 |
|---|
| Symbol | |
|---|
| ID | 5835645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 4400526 |
|---|
| End bp | 4402190 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641369751 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001641402 |
|---|
| Protein GI | 163853359 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0553818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGGT TTGCAACCAC AGGTCTGGCG GGAGCCGCGA TCGCGGTCAC GGCCGTGATG
GCCGTCGACG CCGCCCGGGC GGCTGATCTG CCCGTCAGGA AGGCGGTCCC GATCGAGTTC
GTCCGGGTCT GCAGCGCGAG CGGTGCAGGC TTCTTCTATA TCCCCGGTAC CGACACCTGC
CTGCGCGTTT CGGGCCGCGC CCGCTTCGAG GCCGGGTACA TCCCGGTCCA GAACCGCACC
AACAGTGCGG GCGACCTGTC GCAGTACCGT GGGCTGATGC GCATGAACGT CGATGCGCGC
ACCCAGACCG GCTACGGGAC CCTGCGCGCT TTCCTGCGCG TGGAGGCCGC GAGCCGTACC
GGCGTGACCA TGGCGTCGGG CACGCAGCAA CGCATCGGCA ACGCCTTTCC GGCGACCGGC
CAGGACGCGC TCGGCCGGGT CCAGAACTAT GTCGTGGCCG ACAAGGCCTT CGTTCAATTC
GCCGGGCTGA CAGCGGGCCG CGCCTCCTCG TTCTTCGACT TCTACGCCCA CGATTACGAG
CTGATCGGCT CGACGGCGGG GTCGGACATG CCCTCCACCA ACCTCCTGGC CTACACGTCC
AAGATGGGGG AGGGCTGGTC GGCGACGCTG TCGATGGAGG ATCCGAACCT CCGCAAGAAC
CCGTTCTACG CCGCCTCGGC CGCCCCCACC GGAACCATCC CCGGCCAGAG CGGCGTGAAC
AACGTCTTCG TCACCGCGCC GAGCCCCGTC ATCCTCGGCA CCAATGCCAA CGGTACCGCC
AGCACGGCCG TCTTCGTCGA CGCGGTGCAG CGCTCGCGCA TGCCGGACTT CGTCGGGGCG
CTGCGCTACG ATGCGGGCTG GGGCTCGATC CAGCTCTCGG CCGCCGTCAA GGACGTCAAT
ATCGGCGGCT TCATCGCCAA TTCCGGCATC TCCACCCTGA CCGCCGCGCC GGGTTCCGCG
ACGGGGCCGG TGGGCGCCGG CACCGCCGCA GCCCTGCTCG CCACCCGCGG CATCACATCG
GGATCACAGA CCGATCACGG TTGGGCGGTG CAGGGCGGCA TCAAGCTCAA CCTGCCCTGG
ATCGCCACGG GTGACGGGCT CTACCTGCAG GGCGCCTACG GCGAGGGCGC GCTGATTTAT
ACCGGCTTCT CGTACTTCAC CGGCAACTAT AGCGGCCAGC TCACCCCGGT GCAGGGCGGC
CCCTTCGTAC AGGCCCTGGC CGACGCGGTG ATCAACCCGC TGACCGGCCG GATCGACCTG
TCGAAGAGCT TCACGGCGAC CGCCTCCCTC CTGCATTACT GGGCGCCCGA ATGGCGCTCC
GCCGTCTTCG GGAGCTATGG CGAGGTCGGG TTTCGGCGCG GCACCCGCGA GGCGTTCAGT
CTCGTCAACA ACCTCGTCGG CTCCTCCGCG CCGCCGACCG GCGCGGCCTT CGCATCCAAC
CCGATCCTGC GCGACAACTA CCAGATCATC GCCGGCGCGA GCCTGATCTG GTCGCCGGTC
AAGGATCTCG ATATCGGCAT CGAGGGAACC TATATCGGCA CCGGCCTGCT CGGCGGGCGC
GACGCCGACG CGACCCGCCC CGTCACCGTG AACGGCCTGC CGGCCTATAC CGAGAAGCAC
TACGACACGA CGCAGATCCG CATCCGTGTC CAGCGCGACT TCTGA
|
|---|
| Protein sequence | MGRFATTGLA GAAIAVTAVM AVDAARAADL PVRKAVPIEF VRVCSASGAG FFYIPGTDTC
LRVSGRARFE AGYIPVQNRT NSAGDLSQYR GLMRMNVDAR TQTGYGTLRA FLRVEAASRT
GVTMASGTQQ RIGNAFPATG QDALGRVQNY VVADKAFVQF AGLTAGRASS FFDFYAHDYE
LIGSTAGSDM PSTNLLAYTS KMGEGWSATL SMEDPNLRKN PFYAASAAPT GTIPGQSGVN
NVFVTAPSPV ILGTNANGTA STAVFVDAVQ RSRMPDFVGA LRYDAGWGSI QLSAAVKDVN
IGGFIANSGI STLTAAPGSA TGPVGAGTAA ALLATRGITS GSQTDHGWAV QGGIKLNLPW
IATGDGLYLQ GAYGEGALIY TGFSYFTGNY SGQLTPVQGG PFVQALADAV INPLTGRIDL
SKSFTATASL LHYWAPEWRS AVFGSYGEVG FRRGTREAFS LVNNLVGSSA PPTGAAFASN
PILRDNYQII AGASLIWSPV KDLDIGIEGT YIGTGLLGGR DADATRPVTV NGLPAYTEKH
YDTTQIRIRV QRDF
|
|---|
| |