| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2710 |
|---|
| Symbol | |
|---|
| ID | 5833107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 3029244 |
|---|
| End bp | 3031049 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641368510 |
|---|
| Product | malto-oligosyltrehalose trehalohydrolase |
|---|
| Protein accession | YP_001640172 |
|---|
| Protein GI | 163852129 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.58871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0573085 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGTG CCCATACGAT GCGATTCGGC AGCGAGTTTG CCGAGGACGG TGTGCGGTTC
GCCCTCTGGG CACCGACCGC CAAGGACGTG ACCCTCGTTG TCGATGGGAC AGACCATCCG
ATCCCCGATG TCGGCGAGGG CTGGCGTCGC ACGACGCTGC CGGGGGTGAA GGCCGGTGCG
CGCTATGGCT TCCGCATCGA TGGCGACCTC GTGGTGCCGG ACCCCGCCTC CCGTTTCCAG
CCCGAGGACG TTTCCGCACC GTCCGAGGTG ATCGACCCCA ACGCTTATGC GTGGTCCGAC
CAAGAGTGGA CGGGACGGCC CTGGGAAGAG GCGATCGTCT ACGAGGTGCA TGTCGGCACG
GCCACGCCCG AGGGTACTTA TGCCGGGCTG GAGAAACGCC TCGACGATCT GGTCGATCTC
GGCGTCACGG CGATCGAGTT GCTGCCGCTG GCCGACTTCA AGGGAACGCG CAACTGGGGC
TATGACGGCG TGCTGCCCTA CGCCCCGGAC TCGGCCTATG GCCGCCCGGA CGATCTCAAG
CGCCTGATCG ATACCGCCCA CGCCAAGGGC CTGATGGTGC TGATCGACTG CGTCTACAAT
CACTTCGGCC CGGCCGGAAA CTACCTGCAC GCCTACGCCA AGACCTTCTT CACCGAGCGT
CACCAGACGC CGTGGGGCGC CGGCATCAAT TTCGACGGTA AGGAGTCGGG CCCGGTCGTG
CGCGACTACT TCATTGAGAA TGCGCTCTAC TGGCTGAAGG AGTACCACTT CGACGGCATC
CGCTTCGACG CGGTGCACGC GATCCTCGAT GATTCCGAGA AGCATTTCCT GACGGAACTC
GGCGAGACGA TCCGCAAGAC CCTACCGGAT CGGCACGTCC ATCTGATCCT GGAGAACGAG
GCCAATCAGG CCCGCTGGCT GGAGCGCGAC GACAGCGCGT CTCCGGTGCT TCATACGGCG
CAGTGGGCGG ACGACCTGCA CCATTGCTGG CACGTGCTTC TGACCGGCGA GGATGCCGGC
TACTATGAGA GCTTCGCCGA CAAGCCGGTG GAGCATCTGG CCCGCTGCCT CGCAGAGGGT
TTCGCTTACC AGGGCGAGCC ATTCCCGACT CTCGACAACC ATCCGCGCGG CGAGCCCTCG
GCGCATCTGC CGCCTTCGGC CTTCGTCACC TTCCTTCAGA ACCACGATCA GGTCGGCAAC
CGCGCGCTCG GCGAACGCCT GAACCATCTC GCCGACCCCA AGAAGCTGGC GCTCGCCCGC
GCCGGGCTGC TGCTCGCGCC GCAGATTCCG ATGCTTTGGA TGGGCGAGGA ATGGTCGGCC
TCCGCGCCTT TCCTGTTTTT CGTGGATTTC GCGCCTGACG AGGAATTGAA CAAGGCGGTG
CGTGAAGGCC GTCGCCGCGA GTTCAAGAGC TTTGCCGCCT TCGCCGATGA CACCTCGGTG
ATCCCCGACC CGACGGAGGC GCGAACCTTC GAGGATTCGA AGATCGATTG GGACGAGGCC
GAGACCGAGC CGCATCGCGC CATCTGGGCC GATACGCGCA ACATCCTCCA GATCCGCCGG
CAGAGCGTGG TGCCCCTCAC CAAGAGCCGC TACCTCGGGG CCGACGCCAA GATCCCGGCG
CCGGGTGTCG TGGATTGTAC CTGGCGCTAC GCGGACGGCT GGCTGCGCTT CATCGCGAAT
GTCGGCGACG CGGAGTTCTC GGCGAGTGCC GATGGCGGTC AGGTGATCTG GTCGAGCGGG
GCTGTCCGAC AGGCGATGGA GCTGCCGTCC TGGACGGGCG TCTTCCTGAT CGGTGGCACC
AAGTGA
|
|---|
| Protein sequence | MRRAHTMRFG SEFAEDGVRF ALWAPTAKDV TLVVDGTDHP IPDVGEGWRR TTLPGVKAGA
RYGFRIDGDL VVPDPASRFQ PEDVSAPSEV IDPNAYAWSD QEWTGRPWEE AIVYEVHVGT
ATPEGTYAGL EKRLDDLVDL GVTAIELLPL ADFKGTRNWG YDGVLPYAPD SAYGRPDDLK
RLIDTAHAKG LMVLIDCVYN HFGPAGNYLH AYAKTFFTER HQTPWGAGIN FDGKESGPVV
RDYFIENALY WLKEYHFDGI RFDAVHAILD DSEKHFLTEL GETIRKTLPD RHVHLILENE
ANQARWLERD DSASPVLHTA QWADDLHHCW HVLLTGEDAG YYESFADKPV EHLARCLAEG
FAYQGEPFPT LDNHPRGEPS AHLPPSAFVT FLQNHDQVGN RALGERLNHL ADPKKLALAR
AGLLLAPQIP MLWMGEEWSA SAPFLFFVDF APDEELNKAV REGRRREFKS FAAFADDTSV
IPDPTEARTF EDSKIDWDEA ETEPHRAIWA DTRNILQIRR QSVVPLTKSR YLGADAKIPA
PGVVDCTWRY ADGWLRFIAN VGDAEFSASA DGGQVIWSSG AVRQAMELPS WTGVFLIGGT
K
|
|---|
| |